This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q2EP.1

India/LOC_000Q2EP.1/2019
P. Yadav, A. Shete-Aich, D. Nyayanit & R. Sahay

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2019
Earliest release date
2021-08-07
Sampling location
India (Gujarat State, Amreli)
Isolate name
MCL-19-H-3173

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-08-07
INSDC accession S segment

Host

Host

Submission details

Submission ID
MW298550.1.S
Submitting group
Date submitted
2026-09-25 09:03:48 UTC
Date released
2026-09-25 09:07:40 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
223
Total deleted nucs S segment
1
Length S segment
1633 (90.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T16A
  • C31G
  • C66T
  • A98T
  • A102G
  • A114G
  • C126T
  • C138A
  • T147C
  • C150T
  • G153A
  • T156C
  • T166C
  • A173G
  • G174A
  • A186G
  • C192T
  • A193G
Deletions

S segment

1570
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:Y20F
  • NP:K45R
  • NP:S52G
  • NP:V83A
  • NP:D116E
  • NP:A124S
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:A307V
  • NP:Q405L
  • NP:R428K
Deletions
N/A
Insertions
N/A

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