This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q29Z.1

Display Name: Viet_Nam/LOC_000Q29Z.1/2005
P. V. Tu, N. T. Thao, D. Perera, T. K. Huu, N. T. Tien, T. C. Thuong, O. M. How, M. J. Cardosa & P. C. McMinn

Sample details

Collection date
2005
Collection date (lower bound)
2005-01-01
Collection date (upper bound)
2005-12-31
Earliest release date
2007-11-05
Collection country
Viet Nam
Collection subdivision level 1
South Viet Nam
Isolate name
1070V

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-15 15:26insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institute of Health and Community Medicine, Universiti Malaysia Sarawak

INSDC

NCBI release date
2007-11-05
INSDC accession CV-A16

Alignment and QC metrics CV-A16

Length CV-A16
207
Total SNPs CV-A16
36
Total inserted nucs CV-A16
0
Total deleted nucs CV-A16
2492
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
36.41%

Submission details

Submission ID
EU051154.1.CV-A16
Submitting group
Date submitted
2025-10-15 15:26:18 UTC
Date released
2025-10-15 15:31:45 UTC

Clade

Clade CV-A16
B

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • A768T
  • C771T
  • A774G
  • G780C
  • T783G
  • C786G
  • C789T
  • A792G
  • T795C
  • G798A
  • A804T
  • A810G
  • A816C
  • T819A
  • T822C
  • C828T
  • C834A
  • C837T
    • Deletions
    951-3442
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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