This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q20H.1

Display Name: China/LOC_000Q20H.1
L. Li, Y. He, H. Yang, J. Zhu, X. Xu, J. Dong, Y. Zhu & Q. Jin

Sample details

Collection date (upper bound)
2005-08-15
Earliest release date
2005-08-15
Collection country
China
Collection subdivision level 1
Shenzhen
Isolate name
shzh03-58

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-24 08:53insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Institute For Viral Disease Control and Prevention, Chinese CDC, The State Key Laboratory of Molecular Virology and Genetic Engineering

INSDC

NCBI release date
2005-08-15
NCBI update date
2016-07-26
INSDC accession

Alignment and QC metrics

Length
3202
Total SNPs
558
Total inserted nucs
5
Total deleted nucs
3
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
43.20%
Total stop codons
0

Submission details

Submission ID
AY895135.1
Submitting group
Date submitted
2025-12-24 08:53:43 UTC
Date released
2025-12-24 08:54:53 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T138C
  • T142C
  • G143A
  • G145A
  • T149C
  • A150T
  • C156T
  • G157A
  • C158T
  • A159G
  • T163C
  • A180T
  • C190T
  • T207C
  • G208T
  • A212G
  • C232T
  • C238T
    • Deletions
    693, 707, 743
    Insertions
    ins_701:CT, ins_738:GCT

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A

    • VP2

  • VP2:N45S
  • VP2:P94Q
  • VP2:V124F
  • VP2:E129D
  • VP2:N143D
  • VP2:Q181H
  • VP2:M198I
  • VP2:T200A
  • VP2:F224Y

    • VP3

  • VP3:D93N
  • VP3:M100L
  • VP3:T232A
  • VP3:E237Q
  • VP3:A239G
    • Deletions
    None
    Insertions
    None

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