This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q20H.1

Uganda/LOC_000Q20H.1/2013-08-08
S. Balinandi, S. Whitmer, S. Mulei, L. Nyakarahuka, A. Tumusiime, J. Kyondo, L. Mugisha, M. Almberg, J. Lutwama, T. Shoemaker & J. D. Klena

CDC, VSPB

Sample details

Collection date
2013-08-08
Earliest release date
2021-09-19
Sampling location
Uganda
Isolate name
201301848

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-09-19
INSDC accession S segment

Host

Host

Submission details

Submission ID
MW464945.1.S
Submitting group
Date submitted
2026-07-22 16:51:12 UTC
Date released
2026-07-22 16:55:04 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
136
Total ambiguous nucs S segment
1
Total unknown nucs S segment
2
Length S segment
858 (47.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • A45G
  • G57A
  • A62C
  • A65G
  • A69G
  • G75A
  • A83G
  • A84G
  • A93G
  • A98T
  • A102G
  • A105G
  • G106A
  • A108T
  • T117C
  • C135T
  • C138T
  • T141C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:N8T
  • NP:N9S
  • NP:K15R
  • NP:Y20F
  • NP:G23S
  • NP:K45R
  • NP:D116G
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275G
  • NP:I277V
Deletions
N/A
Insertions
N/A

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