This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q20H.1

Display Name: LOC_000Q20H.1
L. L. Rodriguez, G. O. Maupin, T. G. Ksiazek, P. E. Rollin, A. S. Khan, T. F. Schwarz, R. S. Lofts, J. F. Smith, A. M. Noor, C. J. Peters & S. T. Nichol

Sample details

Collection date (upper bound)
1997-10-21
Earliest release date
1997-10-21

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-24 15:13insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control and Prevention, Special Pathogens Branch, DVRD/NCID

INSDC

NCBI release date
1997-10-21
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma impeltatum

Alignment and QC metrics S

Length S
220
Total SNPs S
35
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
13.16%

Submission details

Submission ID
U75673.1.S
Submitting group
Date submitted
2025-10-24 15:13:55 UTC
Date released
2025-10-24 15:20:07 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A322T
  • S:A325G
  • S:T334G
  • S:A337G
  • S:A349G
  • S:A358G
  • S:C370A
  • S:A379G
  • S:A386C
  • S:T388C
  • S:A394G
  • S:G397A
  • S:C400T
  • S:C403A
  • S:C406T
  • S:G409C
  • S:G418A
  • S:G421A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:T111P
  • NP:D116E
  • NP:T124S
  • NP:G125N
    • Deletions
    None
    Insertions
    None

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