This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZVX.1

Russia/LOC_000PZVX.1/2018-05-07
M. A. Nikiforova, N. A. Kuznetsova, A. M. Shchetinin, A. M. Butenko, A. A. Kozlova, V. P. Larichev, E. V. Vakalova, M. A. Babaeva, T. E. Arjba, V. G. Akishkin, A. R. Azarian, N. N. Nikeshina, O. V. Rubalsky, O. A. Bashkina, A. P. Tkachuk, A. L. Gintsburg & V. A. Gushchin

N.F. Gamaleya Research Center of Epidemiology and Microbiology, Pathogenic Microorganisms Variability Lab

Sample details

Collection date
2018-05-07
Earliest release date
2020-11-14
Sampling location
Russia (Astrakhan region, Narimanovsky district)
Isolate name
PMVL-3A18

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2020-11-14
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
MN987247.1.L/MN987248.1.M/MN987249.1.S
Submitting group
Date submitted
2026-07-22 09:21:01 UTC
Date released
2026-07-22 09:23:26 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
1067
Total inserted nucs M segment
1
Total deleted nucs M segment
6
Length M segment
5338 (97.9%)
Total SNPs L segment
1335
Total inserted nucs L segment
38
Length L segment
12129 (99.9%)
Total SNPs S segment
244
Length S segment
1606 (88.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • G23T
  • A35G
  • A42T
  • G43C
  • T49C
  • A53G
  • G57A
  • C59T
  • C63T
  • C64G
  • T66C
  • A72G
  • A73T
  • C76A
  • A91G
  • G93A
  • C100T
  • A109G

M segment

  • T36C
  • G46A
  • A47G
  • A57T
  • C59T
  • A60T
  • T61C
  • T63C
  • T64C
  • T67A
  • G72C
  • A76G
  • T78C
  • T79C
  • G80A
  • C88T
  • T96C
  • T98C

S segment

  • A51G
  • T63C
  • A65G
  • A98T
  • C99T
  • A105G
  • G118A
  • C123T
  • C126T
  • T141C
  • C150T
  • G155A
  • T159A
  • T166C
  • C171T
  • G174A
  • A186G
  • T195C
Deletions

M segment

326-328, 467-469
Insertions

L segment

ins_67:C, ins_11928:CT, ins_12108:CATTATTTGCAGGGTGTGGGGGGGAACGATTTCTT

M segment

ins_5167:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:V9I
  • GPC:F10L
  • GPC:C11Y
  • GPC:C15S
  • GPC:K19G
  • GPC:T20A
  • GPC:N21H
  • GPC:P23Q
  • GPC:H24S
  • GPC:G26A
  • GPC:N31G
  • GPC:H33N
  • GPC:V34T

NP

  • NP:N9S
  • NP:Y20F
  • NP:V27M
  • NP:S39N
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:Q179L
  • NP:D199E
  • NP:N221S
  • NP:K265R
  • NP:R270K
  • NP:A307P
  • NP:Y311F
  • NP:V327I
  • NP:N419S
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:A202V
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:I223L
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:N448S
Deletions

GPC

GPC:77, GPC:127
Insertions
N/A

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