This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZVX.1

South_Africa/LOC_000PZVX.1
F. J. Burt & R. Swanepoel

National Institute for Communicable Diseases, Special Pathogens Unit

Sample details

Earliest release date
2005-06-01
Sampling location
South Africa
Isolate name
spu68/98

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2005-06-01
INSDC accession S segment

Submission details

Submission ID
AY905639.1.S
Submitting group
Date submitted
2026-10-13 10:58:14 UTC
Date released
2026-10-13 11:00:00 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
75
Length S segment
450 (24.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • C171T
  • A173G
  • G180A
  • A186G
  • C192T
  • C198A
  • T204A
  • G216A
  • C228T
  • G231A
  • G243T
  • A249T
  • A252C
  • A255G
  • T257A
  • A264T
  • T267C
  • G276A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K45R
  • NP:D55E
  • NP:F73Y
  • NP:K91R
  • NP:A100T
  • NP:A154S
  • NP:Q179L
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue