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LOC_000PZVX.1
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Download FASTA
Download metadata TSV
Turkey/LOC_000PZVX.1/2021
A. T. Kalaycioglu,
T. C. Oguzoglu,
O. Ari,
R. Durmaz,
A. Engin,
M. Bakir &
E. Erdem
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology
Sample details
Collection date
2021
Earliest release date
2023-02-20
Sampling location
Turkey
Isolate name
TR-SIVAS-C5F-2021
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-09 14:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-02-20
INSDC accession L
ON623088.1
INSDC accession M
ON623082.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
ON623088.1.L/ON623082.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-09 14:51:52 UTC
Date released
2026-04-09 15:01:50 UTC
Files
Annotations
LOC_000PZVX.1.embl
Alignment and QC
Total SNPs M
1062
Total inserted nucs M
1
Total deleted nucs M
3
Length M
5362 (100%)
Variant M
True
Total SNPs L
876
Total unknown nucs L
1
Length L
8430 (69.6%)
Variant L
True
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
3505
C
G
3523
A
T
3529
C
G
3568
A
C
3571
T
C
3572
T
A
3583
G
C
3586
T
T
3589
G
C
3595
T
T
3607
C
G
3627
A
G
3628
A
A
3630
G
T
3646
C
G
3652
A
G
3676
A
A
3679
G
Show more
M
T
40
A
G
50
A
A
51
G
T
67
C
T
68
C
A
69
G
T
71
A
G
76
C
A
80
G
G
84
A
T
86
C
A
88
G
C
92
T
T
94
C
T
100
C
T
102
C
C
103
T
A
108
G
Show more
Deletions
M
327-329
Insertions
M
ins_5175:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
T
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
L
17
R
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
M
35
T
Show more
RdRp
RdRp:
D
1171
E
RdRp:
R
1184
K
RdRp:
K
1185
R
RdRp:
R
1212
K
RdRp:
V
1228
I
RdRp:
K
1282
M
RdRp:
V
1317
I
RdRp:
I
1363
V
RdRp:
N
1367
D
RdRp:
L
1386
I
RdRp:
S
1436
N
RdRp:
M
1448
L
RdRp:
S
1454
A
RdRp:
R
1456
K
RdRp:
I
1458
L
RdRp:
R
1478
K
RdRp:
V
1495
I
RdRp:
V
1577
I
Show more
Deletions
GPC
GPC:90
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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