This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZVX.1

USA/LOC_000PZVX.1/2015-10-20
N. Grubaugh, S. Grewal, N. L. Matteson, K. Gangavarapu, N. Gurfield & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2015-10-20
Earliest release date
2019-01-20
Sampling location
USA (San_Diego,California)
Isolate name
WNV/bird/San_Diego_CA_USA/2015-10-20/W578

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-08 08:48insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH507981.1
Submitting group
Date submitted
2026-05-08 08:47:39 UTC
Date released
2026-05-08 09:32:41 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
91
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:T108M
  • NS2A:V58I
  • NS2A:R188K
  • NS2A:A200S
  • NS2B:S72R
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:K837R
  • NS5:S889R
  • NS5:T898I
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G222A
  • C435T
  • C450T
  • A507G
  • C531T
  • A630G
  • C723T
  • T960C
  • C1137T
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T1761C
  • T2073C
  • C2109T
  • C2304T
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:T108M

NS2A

  • NS2A:V58I
  • NS2A:R188K
  • NS2A:A200S

NS2B

  • NS2B:S72R

NS5

  • NS5:K837R
  • NS5:S889R
  • NS5:T898I

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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