This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZVX.1

USA/LOC_000PZVX.1/2017-07-07
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2017-07-07
Earliest release date
2019-01-20
Sampling location
USA (Bakersfield,California)
Isolate name
WNV/bird/Bakersfield_CA_USA/2017-07-07/W343

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH507890.1
Submitting group
Date submitted
2026-11-05 10:26:43 UTC
Date released
2026-11-05 10:40:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
89
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS2A:D4E
  • NS2B:I68V
  • NS2B:A103V
  • NS3:I162M
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:K314R
  • NS5:I402T
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T477C
  • C567T
  • T570C
  • A630G
  • C660T
  • C906T
  • G1113A
  • T1332C
  • T1442C
  • C1465T
  • T1656C
  • G1752A
  • C1953T
  • G2031A
  • C2181T
  • C2466T
  • C2529T
  • T2619C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS2A

  • NS2A:D4E

NS2B

  • NS2B:I68V

NS3

  • NS3:I162M

NS5

  • NS5:K314R
  • NS5:I402T

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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