This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PEL0.1

Display Name: Spain/LOC_000PEL0.1/2016-10-17
M. P. Sanchez-Seco, M. J. Sierra, A. Estrada-Pe, F. Valcarcel, R. Molina, E. R. de Arellano, A. S. Olmeda, L. G. San Miguel, M. Jimenez, L. J. Romero, A. Negredo & A. A. Negredo

Sample details

Collection date
2016-10-17
Collection date (lower bound)
2016-10-17
Collection date (upper bound)
2016-10-17
Earliest release date
2023-02-13
Collection country
Spain
Isolate name
Madrid_115_2016

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-12 15:10insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Center of Microbiology, Institute of Health Carlos III, Arbovirus and Imported Viral diseases

INSDC

NCBI release date
2023-02-13
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma lusitanicum

Alignment and QC metrics S

Length S
591
Total SNPs S
85
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
35.35%

Submission details

Submission ID
OK082060.1.S
Submitting group
Date submitted
2025-09-12 15:10:31 UTC
Date released
2025-09-12 15:15:01 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C166T
  • S:G169A
  • S:G171A
  • S:C178A
  • S:T182C
  • S:G189A
  • S:G190A
  • S:T199C
  • S:C208T
  • S:G229A
  • S:C235T
  • S:C244T
  • S:T253A
  • S:G262A
  • S:A268C
  • S:G271A
  • S:T274C
  • S:T289C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:S39N
  • NP:R45K
  • NP:S109N
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
    • Deletions
    None
    Insertions
    None

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