This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PEFB.1

USA/LOC_000PEFB.1/2017-06-17
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2017-06-17
Earliest release date
2019-01-20
Sampling location
USA (Norco,California)
Isolate name
WNV/bird/Norco_CA_USA/2017-06-17/W161

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-18 12:55insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH507743.1
Submitting group
Date submitted
2026-03-18 12:54:31 UTC
Date released
2026-03-18 13:10:32 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
100
Total unknown nucs
97
Length
10302 (92.5%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS2A:A3T
  • NS2A:G184S
  • NS2B:T34S
  • NS2B:A103V
  • NS3:I162M
  • NS3:T249P
  • NS3:I356T
  • NS3:S467L
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • C732T
  • C816T
  • T1442C
  • T1443C
  • G1455A
  • C1465T
  • A1566G
  • C1569T
  • C2181T
  • T2250C
  • C2340T
  • C2454T
  • C2466T
  • T2952A
  • T3160C
  • G3532A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS2A

  • NS2A:A3T
  • NS2A:G184S

NS2B

  • NS2B:T34S

NS3

  • NS3:I162M
  • NS3:S467L

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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