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LOC_000PEFB.1
Download
Download FASTA
Download metadata TSV
Kosovo/LOC_000PEFB.1/2013
P. Emmerich,
X. Jakupi,
R. von Possel,
L. Berisha,
B. Halili,
S. Gunther,
D. Cadar,
S. Ahmeti &
J. Schmidt-Chanasit
Bernhard Nocht Institute for Tropical Medicine, Virology
Sample details
Collection date
2013
Earliest release date
2018-08-05
Sampling location
Kosovo
Isolate name
2013_16_44
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-13 15:41
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2018-08-05
INSDC accession L
MH133291.1
INSDC accession M
MH133290.1
INSDC accession S
MH133289.1
Submission details
Submission ID
MH133291.1.L/MH133290.1.M/MH133289.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-13 15:41:04 UTC
Date released
2026-03-13 15:48:31 UTC
Host
Host
Homo sapiens
Lineage
Segment S Lineage
V
Files
annotations
LOC_000PEFB.1.embl
Alignment and QC
Total SNPs M
1040
Total inserted nucs M
1
Total deleted nucs M
3
Length M
5364 (100%)
Variant M
False
Total SNPs L
1297
Total inserted nucs L
42
Length L
12150 (100%)
Variant L
False
Total SNPs S
251
Total inserted nucs S
1
Length S
1673 (100%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
A
42
T
G
43
C
T
49
C
A
53
G
T
58
A
C
59
T
C
63
T
C
64
G
T
66
C
A
72
G
A
73
T
A
91
G
G
93
A
C
100
T
A
109
G
A
124
G
Show more
M
T
40
C
G
50
A
A
51
G
A
61
T
T
67
C
T
68
C
A
69
G
T
71
A
G
76
C
A
80
G
T
83
C
G
84
A
C
85
T
T
86
C
C
89
T
C
92
T
T
100
C
T
102
C
Show more
S
T
49
C
A
50
T
G
54
A
T
79
C
A
81
G
G
99
A
G
100
A
A
109
G
C
115
T
A
121
G
G
134
A
C
142
T
T
157
C
G
171
A
T
175
A
C
178
A
T
182
C
C
187
T
Show more
Deletions
M
333-335
Insertions
L
ins_67:C, ins_11928:CG, ins_12092:CTATTCATACCAGTTTCATTATTTAAAGGGTGTGGGGGG
M
ins_5171:T
S
ins_1577:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
V
GPC:
D
40
T
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
N
419
S
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
G
449
N
Show more
Deletions
GPC
GPC:77
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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