This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PEFB.1

Oman/LOC_000PEFB.1/2014
B. Atkinson, S. Al-Abri, H. Al-Kindi, S. Bawakir, A. Al-Jardani, I. Al-Abaidani, S. Al-Mahrooqi, A. Al-Maani, S. Almahrouqi, B. Al-Rawahi, N. Beeching & R. Hewson

Public Health England, Research

Sample details

Collection date
2014
Earliest release date
2018-05-01
Sampling location
Oman
Isolate name
Oman 2014-860P

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-05-01
INSDC accession S segment

Submission details

Submission ID
MH037288.1.S
Submitting group
Date submitted
2026-03-23 16:00:01 UTC
Date released
2026-03-23 16:02:34 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S segment
160
Length S segment
1449 (80.2%)
Variant S segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T63C
  • A65G
  • A84G
  • A93G
  • A98T
  • A102G
  • C150T
  • G153A
  • T156C
  • T166C
  • A173G
  • G174A
  • G180A
  • A186G
  • C192T
  • C201T
  • C225T
  • G231A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:N9S
  • NP:Y20F
  • NP:K45R
  • NP:V83A
  • NP:D116E
  • NP:A124S
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:A307V
  • NP:E322D
  • NP:Q405L
  • NP:R428K
Deletions
N/A
Insertions
N/A

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