This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PEFB.1

Japan/LOC_000PEFB.1/2010
A. Kaida, H. Kubo, J. Sekiguchi, U. Kohdera, M. Togawa, M. Shiomi, T. Nishigaki & N. Iritani

Microbiology; 8-34, Tojo-cho, Tennoji-ku, Osaka, Osaka 543-0026

Sample details

Collection date
2010
Earliest release date
2011-03-25
Sampling location
Japan (Osaka City)
Isolate name
JPOC10-616

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-15 08:07insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2011-03-25
NCBI update date
2016-10-15
INSDC accession

Submission details

Submission ID
AB601880.1
Submitting group
Date submitted
2026-06-15 08:07:24 UTC
Date released
2026-06-15 08:09:07 UTC

Clade

Clade EV-D68
C

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
112
Length
927 (12.6%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • C2390T
  • A2392G
  • C2397T
  • C2401G
  • G2405C
  • A2406G
  • T2421C
  • G2424A
  • G2425A
  • G2427T
  • T2433C
  • G2460A
  • G2463A
  • T2499C
  • C2500T
  • T2517A
  • T2520C
  • A2568G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

VP1

  • VP1:S1L
  • VP1:N2D
  • VP1:H5D
  • VP1:G6A
  • VP1:V13I
  • VP1:G76S
  • VP1:K84R
  • VP1:A92T
  • VP1:S95E
  • VP1:G97Q
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:N143T
  • VP1:D144S
  • VP1:S145N
  • VP1:E169Q
  • VP1:V207I
Deletions
N/A
Insertions
N/A

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