This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDMZ.1

Iran/LOC_000PDMZ.1/2015
N. Shahhosseini & S. Chinikar

Bernhard Nocht Institute for Tropical Medicine, Virology

Sample details

Collection date
2015
Earliest release date
2016-12-31
Sampling location
Iran
Isolate name
IR-T1-HMA-Chabahar

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-12-31
INSDC accession S

Host

Host

Submission details

Submission ID
KU242339.1.S
Submitting group
Date submitted
2026-08-07 11:59:41 UTC
Date released
2026-08-07 12:03:06 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs S
68
Length S
516 (30.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • G169A
  • T172C
  • C178A
  • T182C
  • G190A
  • G196A
  • T199C
  • C208T
  • C217T
  • G229A
  • C235T
  • A268C
  • G271A
  • T274C
  • T289C
  • C295T
  • A298T
  • T303C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:V83A
  • NP:T111P
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
Deletions
N/A
Insertions
N/A

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