This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDMZ.1

Display Name: France/LOC_000PDMZ.1/2021-07-09
A. Mirand, R. Cohen, M. Bisseux, S. Tomba, F. C. Sellem, N. Gelbert, S. Bechet, B. Frandji, C. Archimbaud, A. Brebion, H. Chabrolles, C. Regagnon, C. Levy, J. L. Bailly & C. Henquell

Sample details

Collection date
2021-07-09
Collection date (lower bound)
2021-07-09
Collection date (upper bound)
2021-07-09
Earliest release date
2021-12-20
Collection country
France
Collection subdivision level 1
Grand Est

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-14 14:32insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centre National de Reference Enterovirus et Parechovirus - Chu Clermont Ferrand, Virologie

INSDC

NCBI release date
2021-12-20
INSDC accession CV-A16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A16

Length CV-A16
858
Total SNPs CV-A16
201
Total inserted nucs CV-A16
0
Total deleted nucs CV-A16
0
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
11.57%

Submission details

Submission ID
OK635702.1.CV-A16
Submitting group
Date submitted
2025-10-14 14:32:52 UTC
Date released
2025-10-14 15:15:10 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • C2158A
  • C2160T
  • T2163A
  • C2170T
  • A2175T
  • C2178G
  • A2187C
  • T2196C
  • C2199G
  • C2200T
  • C2202A
  • A2205G
  • C2208T
  • A2211T
  • C2214G
  • G2217A
  • C2218T
  • A2220G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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