This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDMZ.1

India/LOC_000PDMZ.1/2013
P. D. Yadav, A. M. Shete & D. T. Mourya

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2013
Earliest release date
2017-09-06
Sampling location
India
Isolate name
NIV1310776

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession L
INSDC accession S

Submission details

Submission ID
KT384388.1.L/KT384397.1.S
Submitting group
Date submitted
2026-10-13 10:58:13 UTC
Date released
2026-10-13 11:01:31 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Alignment and QC

Total SNPs L
146
Length L
1118 (9.23%)
Total SNPs S
183
Length S
1447 (86.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G6160A
  • G6163A
  • A6171G
  • C6173A
  • G6175T
  • T6176A
  • C6177T
  • A6178C
  • G6181A
  • C6182G
  • T6183C
  • A6190G
  • A6192G
  • G6193A
  • C6194G
  • A6195C
  • C6196A
  • T6199C

S

  • A61G
  • C64T
  • G67A
  • T79C
  • G99A
  • A118G
  • C142T
  • T157C
  • C166T
  • C178A
  • T182C
  • G190A
  • G196A
  • C214T
  • C217T
  • G229A
  • C235T
  • C238T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:R15K
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:K354R
  • NP:V436I

RdRp

  • RdRp:E2032G
  • RdRp:L2033I
  • RdRp:S2034I
  • RdRp:L2036A
  • RdRp:E2039G
  • RdRp:H2040A
  • RdRp:V2074I
  • RdRp:K2110R
  • RdRp:V2123I
  • RdRp:Q2127R
  • RdRp:K2128R
  • RdRp:I2134T
  • RdRp:V2148A
  • RdRp:S2197G
  • RdRp:A2330T
Deletions
N/A
Insertions
N/A

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