LOC_000PDK3.1

Download

India/LOC_000PDK3.1/2015

P. D. Yadav, D. Y. Patil, A. M. Shete, P. Kokate, P. Goyal, S. Jadhav, S. Sinha, D. Zawar, S. K. Sharma, A. Kapil, D. K. Sharma, K. J. Upadhyay & D. T. Mourya

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date

2015

Earliest release date

2016-11-25

Sampling location

India

Isolate name

NIV151175

Data use terms

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2016-11-25

INSDC accession L

KT384386.1

INSDC accession M

KT384394.1

INSDC accession S

KT384396.1

Submission details

Submission ID

KT384386.1.L/KT384394.1.M/KT384396.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-10-13 10:58:13 UTC

Date released

2026-10-13 11:01:31 UTC

Lineage

Segment S Lineage

IV.1

Files

Annotations

LOC_000PDK3.1.embl

Alignment and QC

Total SNPs L

149

Length L

1040 (8.59%)

Total SNPs M

165

Length M

824 (15.4%)

Total SNPs S

167

Length S

1446 (86.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

G370A
A376G
A379G
A385T
A388G
T394C
C415T
A416G
T442A
C445T
T466C
C475T
C481T
T499C
T509C
A523G
G538T
T550G

M

C126T
A128G
T137C
G143A
A146G
G147A
C153A
T155C
T159C
A169G
A170G
A174G
G175A
A185T
G189C
A192G
C193T
C194T

S

G67A
T79C
A81G
G99A
A109G
A118G
C166T
G169A
T172C
C178A
T182C
G190A
G196A
T199C
C208T
C217T
G229A
C235T

Deletions

N/A

Insertions

N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references