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LOC_000PD24.1
Download
Download FASTA
Download metadata TSV
Nigeria/LOC_000PD24.1/1965
A. N. Lukashev,
A. S. Klimentov,
S. E. Smirnova,
T. K. Dzagurova,
J. F. Drexler &
A. P. Gmyl
Chumakov Institute of Poliomyelitis and Viral Encephalitides
Sample details
Collection date
1965
Earliest release date
2016-12-07
Sampling location
Nigeria
Isolate name
IbAn7620
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-23 14:57
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-12-07
INSDC accession L
KX013450.1
INSDC accession M
KX013451.1
INSDC accession S
KX013452.1
Host
Host
domestic goat; goat; goats (Capra hircus)
Submission details
Submission ID
KX013450.1.L/KX013451.1.M/KX013452.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-23 14:57:32 UTC
Date released
2026-06-23 15:00:08 UTC
Lineage
Segment S Lineage
IV.1
Files
Annotations
LOC_000PD24.1.embl
Alignment and QC
Total SNPs L
968
Total inserted nucs L
32
Total deleted nucs L
6
Length L
12118 (99.9%)
Total SNPs S
244
Total deleted nucs S
1
Length S
1629 (97.5%)
Total SNPs M
124
Length M
5336 (99.4%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
32
A
A
35
G
A
36
T
T
52
C
C
59
T
T
60
A
C
63
G
C
64
T
T
65
C
T
70
A
C
82
T
A
92
G
G
93
A
C
148
T
T
160
C
T
163
C
G
175
A
T
181
C
Show more
M
A
34
T
A
61
G
A
64
G
G
76
A
G
110
A
C
153
T
C
206
T
C
217
T
C
250
T
T
259
C
C
320
T
C
329
T
T
360
C
G
362
A
A
377
G
T
385
C
C
404
T
T
406
C
Show more
S
G
54
A
A
61
G
G
67
A
C
97
T
A
118
G
G
123
A
A
124
G
A
130
G
T
133
A
G
136
A
C
139
T
C
142
T
C
154
T
T
155
C
T
163
C
C
166
T
G
169
A
T
175
C
Show more
Deletions
L
12066-12071
S
1600
Insertions
L
ins_11928:TG, ins_12108:TTCATTTATAATTGTTTTGGGGTGTGGGGG
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
6
I
GPC:
H
21
Y
GPC:
P
42
L
GPC:
S
53
F
GPC:
L
56
P
GPC:
S
90
P
GPC:
V
98
A
GPC:
L
105
S
GPC:
G
108
S
GPC:
P
112
F
GPC:
P
123
L
GPC:
S
128
G
GPC:
N
131
D
GPC:
V
146
M
GPC:
K
168
R
GPC:
I
223
T
GPC:
V
224
I
GPC:
T
237
K
Show more
NP
NP:
G
23
E
NP:
Y
34
H
NP:
R
45
K
NP:
S
65
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
A
147
T
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
T
241
A
NP:
I
246
V
NP:
R
270
K
NP:
A
271
S
NP:
S
301
G
NP:
Q
405
L
NP:
N
419
S
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RdRp
RdRp:
S
6
D
RdRp:
Y
60
N
RdRp:
S
67
L
RdRp:
I
131
M
RdRp:
I
176
M
RdRp:
N
206
H
RdRp:
V
214
I
RdRp:
V
259
I
RdRp:
R
302
K
RdRp:
T
406
I
RdRp:
S
409
G
RdRp:
I
451
V
RdRp:
I
505
T
RdRp:
V
713
M
RdRp:
G
763
E
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
R
770
K
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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