This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PD24.1

Iran/LOC_000PD24.1/2015
N. Shahhosseini & S. Chinikar

Bernhard Nocht Institute for Tropical Medicine

Sample details

Collection date
2015
Earliest release date
2016-09-03
Sampling location
Iran
Isolate name
Noshahr-59

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-09-03
INSDC accession S segment

Host

Host

Submission details

Submission ID
KT588642.1.S
Submitting group
Date submitted
2026-07-20 11:52:13 UTC
Date released
2026-07-20 11:56:18 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
51
Length S segment
348 (19.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • C150T
  • G155A
  • T159A
  • T166C
  • C171T
  • A186G
  • T195C
  • C201T
  • A213G
  • C228T
  • G231A
  • G246A
  • A252C
  • A255G
  • T258C
  • T267C
  • G276A
  • G282T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:S39N
  • NP:A100S
  • NP:S109N
  • NP:T111A
Deletions
N/A
Insertions
N/A

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