This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PD24.1

Iran/LOC_000PD24.1/2014
P. Biglari, S. Chinikar, H. Belqeiszadeh, Z. Telmadarraiy, E. Mostafavi, M. Ghaffari, S. Javaherizadeh, N. Nowotny, A. R. Fooks & N. Shahhosseini

Pasteur Institute of Iran

Sample details

Collection date
2014
Earliest release date
2016-09-24
Sampling location
Iran
Isolate name
Iran/IR-T7-HSP/2014

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-09-24
INSDC accession S segment

Host

Host

Submission details

Submission ID
KT931954.1.S
Submitting group
Date submitted
2026-07-02 15:50:26 UTC
Date released
2026-07-02 15:53:22 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
63
Length S segment
478 (26.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • G153A
  • T156C
  • T166C
  • A173G
  • G174A
  • G180A
  • A186G
  • C192T
  • C201T
  • G231A
  • A252C
  • T258C
  • T273C
  • G282T
  • T287C
  • G306T
  • A309G
  • T318G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K45R
  • NP:V83A
  • NP:T111P
  • NP:D116E
  • NP:A124S
  • NP:Q179L
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue