This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PD24.1

Spain/LOC_000PD24.1/2023-09-27
C. Andres, J. Vila & A. Anton

National Institute for Public Health and the Environment, Centre for Infectious Disease Research, Diagnostics and Screening

Sample details

Collection date
2023-09-27
Earliest release date
2025-11-13
Sampling location
Spain
Isolate name
ES01-23-07

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-01 15:12insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-11-13
NCBI update date
2025-11-13
INSDC accession

Host

Host

Submission details

Submission ID
PQ585557.1
Submitting group
Date submitted
2026-04-01 15:12:22 UTC
Date released
2026-04-01 15:41:16 UTC

Clade

Clade EV-D68
B3

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
62
Length
346 (4.7%)
Variant
False

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • T2526G
  • C2529T
  • C2550T
  • A2568G
  • G2577A
  • T2580C
  • G2586A
  • G2589C
  • G2592A
  • G2595T
  • T2596C
  • G2604A
  • T2613C
  • G2614A
  • G2619A
  • C2625T
  • C2626T
  • A2628G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

VP1

  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95T
  • VP1:G97Q
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:D144N
  • VP1:S145N
  • VP1:M148V
Deletions
N/A
Insertions
N/A

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