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LOC_000PD24.1
Download
Download FASTA
Download metadata TSV
China/LOC_000PD24.1/2004
Z. Zhou,
W. Meng,
F. Deng,
H. Wang,
T. Li,
Y. Zhang,
S. Sun &
Z. Hu
Wuhan Institution of Virology, CAS, Molecular Virology and Bioengeneering Research Group
Sample details
Collection date
2004
Earliest release date
2010-03-15
Sampling location
China
Isolate name
79121M18
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2010-03-15
INSDC accession L
GU477492.1
INSDC accession M
GU477493.1
INSDC accession S
GU477494.1
Host
Host
ticks (Ixodoidea)
Submission details
Submission ID
GU477492.1.L/GU477493.1.M/GU477494.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-25 17:26:30 UTC
Date released
2026-09-25 17:28:07 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000PD24.1.embl
Alignment and QC
Total SNPs L
1520
Total inserted nucs L
52
Total deleted nucs L
2
Length L
12158 (100%)
Total SNPs M
1503
Total inserted nucs M
85
Total deleted nucs M
74
Length M
5377 (100%)
Total SNPs S
214
Total inserted nucs S
1
Length S
1673 (100%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
G
32
A
A
35
G
A
42
G
G
43
C
T
49
C
C
59
T
T
62
C
G
71
C
G
93
A
A
109
G
T
131
A
T
139
C
C
148
T
T
151
C
T
160
C
T
163
C
C
193
T
Show more
M
G
50
T
A
51
G
A
52
T
G
56
T
T
58
A
T
59
A
T
65
G
A
69
G
A
70
T
T
71
G
T
72
A
G
73
T
G
76
A
A
80
G
C
81
T
C
82
T
T
83
A
G
84
T
Show more
S
C
38
A
T
48
C
A
50
G
G
51
A
G
54
A
A
61
G
G
67
A
C
97
T
G
99
A
A
118
G
C
142
T
T
157
C
C
166
T
C
178
A
T
182
C
G
190
A
G
196
A
C
217
T
Show more
Deletions
L
67, 68
M
345-362, 759-776, 5254-5291
Insertions
L
ins_11928:TG, ins_12102:CATTCATTTCAGTTTCACTATTTCCAGGGTGTGGGGGGAACGAATTTCTT
M
ins_209:ACCTCA, ins_395:CAAACG, ins_462:GTATCACCATATTGAGTGCATCAAATACTAGCTTGCCCATATCAT, ins_634:TGA, ins_5199:CATGGTTTGCTTAACAAAACATGGC
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
K
GPC:
H
2
F
GPC:
I
3
M
GPC:
S
4
L
GPC:
M
6
I
GPC:
Y
7
N
GPC:
A
8
F
GPC:
L
12
H
GPC:
Q
13
L
GPC:
C
15
W
GPC:
L
17
G
GPC:
E
19
G
GPC:
T
20
V
GPC:
H
21
T
GPC:
S
23
G
GPC:
H
24
V
GPC:
N
25
E
GPC:
E
26
T
Show more
NP
NP:
R
15
K
NP:
K
91
R
NP:
D
116
E
NP:
T
124
A
NP:
G
125
D
NP:
A
146
T
NP:
N
150
H
NP:
N
188
S
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
D
262
N
NP:
R
270
K
NP:
S
301
G
NP:
M
353
L
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
M
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
P
496
S
RdRp:
S
498
G
Show more
Deletions
GPC
GPC:207-211
Insertions
GPC
ins_GPC:124:ILSASNTSLPISS
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L
M
S
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