This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PD24.1

unknown/LQ868189.1/unknown
G. Ciaramella, S. Himansu, E. Y. Huang & T. Zaks

Sample details

Earliest release date
2018-09-19

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-08 08:48insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-09-19
NCBI update date
2018-09-19
INSDC accession

Host

Host

Submission details

Submission ID
LQ868189.1
Submitting group
Date submitted
2026-05-08 08:47:39 UTC
Date released
2026-05-08 09:29:34 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
98
Total inserted nucs
3
Total deleted nucs
1822
Total frame shifts
8
Frame shifts
prM:63-64(nt:651-656),prM:124-125(nt:833-840),prM:149-167(nt:909-966),NS1:26-31(nt:2543-2562),NS1:37-90(nt:2577-2738),NS1:99-102(nt:2763-2775),NS1:120-352(nt:2826-3525),NS2A:207-231(nt:4143-4218)
Length
1778 (32.6%)
Amino Acid Mutations from founder clade
  • NS1:M96K
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:W68K
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C551G
  • T552G
  • G558T
  • C561G
  • C578A
  • C836T
  • G838T
  • C1377T
  • A1401G
  • T1442C
  • C1465T
  • A1701G
  • T1965C
  • C2025T
  • C2151T
  • C2371T
  • C2466T
  • T2527A
Deletions

562-573, 581-650, 657-664, 667-783, 790-832, 841-902, 907, 908, 916-966, 2470-2524, 2536-2542, 2554, 2563-2566, 2599-2643, 2653-2692, 2698-2723, 2758-2762, 2776-2794, 2807-2825, 2834-2846, 2851-2856, 2864-2884, 2896-2919, 2932-2982, 3004-3033, 3042-4109, 4120-4142
Insertions

ins_2576:CT, ins_2738:C

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:M96K

env

  • env:V159A
  • env:L167F

prM

  • prM:W68K
Deletions

NS1

NS1:32-36, NS1:97, NS1:98, NS1:103-109, NS1:114-119

NS2A

NS2A:199-206

prM

prM:65-67, prM:75-123, prM:126-148
Insertions
N/A

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