This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PD24.1

Spain/LOC_000PD24.1/2014-11-29
M. N. B. Cajimat, S. E. Rodriguez, I. U. E. Schuster, D. M. Swetnam, T. G. Ksiazek, M. A. Habela, A. I. Negredo, A. Estrada-Pena, A. D. T. Barrett & D. A. Bente

University of Texas Medical Branch - Galveston, Pathology

Sample details

Collection date
2014-11-29
Earliest release date
2017-08-30
Sampling location
Spain
Isolate name
Caceres 2014

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-08-30
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Submission details

Submission ID
MF547417.1.L/MF547416.1.M/MF547415.1.S
Submitting group
Date submitted
2026-03-23 16:00:01 UTC
Date released
2026-03-23 16:02:34 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs M segment
698
Total inserted nucs M segment
4
Length M segment
5366 (98.3%)
Variant M segment
False
Total SNPs S segment
32
Total inserted nucs S segment
16
Length S segment
1673 (91.7%)
Variant S segment
False
Total SNPs L segment
261
Length L segment
11921 (98.5%)
Variant L segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • A35G
  • T62C
  • T65C
  • T70C
  • G93A
  • G178A
  • T254A
  • A298G
  • C313T
  • G330A
  • T340C
  • G472A
  • T550G
  • G553A
  • C673T
  • T781C
  • C829T
  • C868T

M segment

  • A30G
  • G65A
  • T78C
  • T81C
  • C82T
  • T101C
  • G103A
  • G113A
  • T115C
  • T116C
  • C118T
  • T122C
  • G124A
  • A127G
  • C133T
  • A139G
  • G142A
  • A143G

S segment

  • T16A
  • A98T
  • T111C
  • C126T
  • C228T
  • A311G
  • A321G
  • C327T
  • G330A
  • G504A
  • T591G
  • G765A
  • A768G
  • T912C
  • C1035T
  • T1062C
  • T1080C
  • A1095T
Deletions
N/A
Insertions

M segment

ins_0:TCTC

S segment

ins_0:TCTCAAAGAAACACGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:V9I
  • GPC:F10L
  • GPC:K19E
  • GPC:N21H
  • GPC:P23S
  • GPC:G26E
  • GPC:E28R
  • GPC:N31K
  • GPC:H33D
  • GPC:V34T
  • GPC:D39G
  • GPC:S41N
  • GPC:Q42L
  • GPC:P53S
  • GPC:V54I
  • GPC:T62I
  • GPC:S64T
  • GPC:L70P

NP

  • NP:Y20F
  • NP:K91R

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:S85N
  • RdRp:F439I
  • RdRp:E463D
  • RdRp:I505T
  • RdRp:S766L
  • RdRp:T767A
  • RdRp:I783V
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:A1038T
  • RdRp:D1040E
  • RdRp:G1047E
  • RdRp:H1161N
  • RdRp:V1228I
  • RdRp:I1363V
Deletions
N/A
Insertions
N/A

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