This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PD24.1

Iran/LOC_000PD24.1/2015
P. Biglari, S. Chinikar, H. Belqeiszadeh, Z. Telmadarraiy, E. Mostafavi, M. Ghaffari, S. Javaherizadeh, N. Nowotny, A. R. Fooks & N. Shahhosseini

Bernhard Nocht Institute for Tropical Medicine

Sample details

Collection date
2015
Earliest release date
2016-09-24
Sampling location
Iran
Isolate name
Iran/IR-T11-RSA/2015

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-09-24
INSDC accession S

Host

Host

Submission details

Submission ID
KT931958.1.S
Submitting group
Date submitted
2026-07-07 12:47:52 UTC
Date released
2026-07-07 12:51:35 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs S
77
Length S
528 (31.6%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • C154A
  • C166T
  • G169A
  • G171A
  • T172C
  • C178A
  • T182C
  • G190A
  • T199C
  • C208T
  • A209G
  • C217T
  • G229A
  • G262A
  • A268C
  • G271A
  • T289C
  • C295T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:S39N
  • NP:S52G
  • NP:V83A
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:F204I
  • NP:V205C
Deletions
N/A
Insertions
N/A

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