This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PC5Z.1

USA/LOC_000PC5Z.1/2015-07-10
N. Grubaugh, S. Grewal, N. L. Matteson, K. Gangavarapu, N. Gurfield & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2015-07-10
Earliest release date
2019-01-20
Sampling location
USA (Lemon_Grove,California)
Isolate name
WNV/mosquito/Lemon_Grove_CA_USA/2015-07-10/W080

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-21 14:54insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
MH507673.1
Submitting group
Date submitted
2026-02-21 14:54:02 UTC
Date released
2026-02-21 15:14:05 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
79
Length
10302 (93.4%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • T850C
  • G1098A
  • G1185A
  • A1320G
  • T1442C
  • C1465T
  • C1470T
  • G1485A
  • C1773T
  • C1974T
  • C2466T
  • A2847G
  • T3093C
  • T3399C
  • A3516C
  • A3634G
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:Q349H

    • NS2A

  • NS2A:I37V
  • NS2A:I39L

    • NS4A

  • NS4A:A85T
  • NS4A:K124R

    • NS5

  • NS5:N306S
  • NS5:K314R
  • NS5:A860T

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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