This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PC5Z.1

Display Name: Sudan/LOC_000PC5Z.1/2004
Lopera, J. G.; Bradford, R.; Rashid, S.; Shifflett, J.; Towle, T.; Eskandarinezhad, S.; Bruce, C.; Frank, A.; Sohn, J.-W.; Benton, B.

Submission details

Submission ID
MT583347.1
Submitting group
Date submitted
2025-05-08 15:58:25 UTC
Date released
2025-05-08 15:58:44 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-08 15:58insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
ATCC/BEI Resources, Sequencing and Bioinformatics Center

Alignment and QC metrics

Completeness
99.77%
Length
18831
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
972
Total unknown nucs
0

Sample details

Earliest release date
2021-08-17
Collection country
Sudan
Collection date
2004
Collection date (lower bound)
2004-01-01
Collection date (upper bound)
2004-12-31
Isolate name
Ebolavirus Yambio H.sapiens-tc/2004

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2021-08-17
NCBI update date
2021-08-17

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • T30A
  • T32G
  • A96G
  • C146T
  • A181G
  • T205G
  • G244T
  • A258G
  • T264A
  • T279A
  • C282T
  • A292G
  • A310G
  • A314G
  • T323C
  • C330T
  • T331C
  • A338G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:G2E
  • GP:D237N
  • GP:R243L
  • GP:R272K
  • GP:A310T
  • GP:A322T
  • GP:I326T
  • GP:N346D
  • GP:P352S
  • GP:I355V
  • GP:G374D
  • GP:A385T
  • GP:H395N
  • GP:G402R
  • GP:I403T
  • GP:R404G
  • GP:P405L
  • GP:P411L

    • L

  • L:K43R
  • L:T58A
  • L:V91A
  • L:A157S
  • L:N273D
  • L:I954V
  • L:P1095S
  • L:K1105R
  • L:N1349D
  • L:D1383E
  • L:I1577V
  • L:S1585P
  • L:T1602I
  • L:G1616E
  • L:N1656K
  • L:R1680Q
  • L:N1681S
  • L:F1708L

    • NP

  • NP:S47N
  • NP:E436D
  • NP:P446T
  • NP:Q496R
  • NP:G503E
  • NP:S505N
  • NP:H513Y
  • NP:P527S
  • NP:P544S
  • NP:Q560H
  • NP:D577N
  • NP:V593G
  • NP:V596I
  • NP:G598E
  • NP:N601T
  • NP:N626S
  • NP:A627T
  • NP:G630S

    • VP24

  • VP24:P233S

    • VP30

  • VP30:N12S
  • VP30:V71I

    • VP35

  • VP35:R5K
  • VP35:N38T
  • VP35:A43T
  • VP35:A77T
  • VP35:G98S
  • VP35:V100I
  • VP35:T101A
  • VP35:T102N
  • VP35:K180R
  • VP35:I190T
  • VP35:A275T
  • VP35:A324T

    • sGP

  • sGP:G2E
  • sGP:D237N
  • sGP:R243L
  • sGP:R272K

    • ssGP

  • ssGP:G2E
  • ssGP:D237N
  • ssGP:R243L
  • ssGP:R272K
  • ssGP:S309N
    • Deletions
    None
    Insertions
    None

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