This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PC5Z.1

Display Name: China/LOC_000PC5Z.1/2015-06
Y. Hu, F. Yu, Q. Song, R. Zhu, L. Jia, L. Liu, H. Dong, J. Deng & Y. Qian

Sample details

Collection date
2015-06
Collection date (lower bound)
2015-06-01
Collection date (upper bound)
2015-06-30
Earliest release date
2022-10-16
Collection country
China
Collection subdivision level 1
Beijing
Isolate name
CVA16/DS3186/BJ/2015

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-27 07:37insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Capital Institute of Pediatrics, Laboratory of Virology

INSDC

NCBI release date
2022-10-16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
7334
Total SNPs
1562
Total inserted nucs
16
Total deleted nucs
19
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
98.97%

Submission details

Submission ID
MZ671884.1.CV-A16
Submitting group
Date submitted
2025-11-27 07:37:01 UTC
Date released
2025-11-27 08:24:12 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T69C
  • C71T
  • G89A
  • T90A
  • T103G
  • A119T
  • C123T
  • C126A
  • T129A
  • A134G
  • G137A
  • T138A
  • C142T
  • A143G
  • A154G
  • T184A
  • C194T
  • C217T
    • Deletions
    100, 131, 132, 583, 716-724, 7332-7337
    Insertions
    ins_126:A, ins_693:TAATCT, ins_7345:AGTTTAAAG

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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