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LOC_000PC33.1
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Display Name: China/LOC_000PC33.1/1976
A. Moming,
Q. Zhu,
Y. Bai,
J. Jin,
Q. Wu,
Z. Su,
S. Tang,
Y. Zhang,
S. Shen &
F. Deng
Submission details
Submission ID
OR047179.1.L/OR047159.1.M/OR047139.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-01 21:35:50 UTC
Date released
2025-07-01 21:40:14 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-07-01 21:35
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences
Alignment and QC metrics L
Completeness L
99.95%
Length L
12157
Total ambiguous nucs L
0
Total deleted nucs L
8
Total frame shifts L
0
Total inserted nucs L
63
Total SNPs L
1592
Total unknown nucs L
0
Alignment and QC metrics M
Completeness M
100.00%
Length M
5609
Total ambiguous nucs M
0
Total deleted nucs M
12
Total frame shifts M
0
Total inserted nucs M
255
Total SNPs M
597
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
100.00%
Length S
1883
Total ambiguous nucs S
0
Total deleted nucs S
1
Total frame shifts S
0
Total inserted nucs S
212
Total SNPs S
220
Total unknown nucs S
0
Sample details
Earliest release date
2023-08-21
Collection country
China
Collection date
1976
Collection date (lower bound)
1976-01-01
Collection date (upper bound)
1976-12-31
Isolate name
A76048
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
OR047179.1
INSDC accession M
OR047159.1
INSDC accession S
OR047139.1
NCBI release date
2023-08-21
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
10
C
L:
G
23
T
L:
A
35
G
L:
G
43
C
L:
T
49
C
L:
A
50
G
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
G
69
A
L:
G
71
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
A
124
G
L:
T
131
A
L:
C
136
T
Show more
M
M:
A
7
G
M:
T
12
G
M:
A
13
G
M:
T
15
G
M:
T
16
G
M:
T
68
C
M:
G
76
A
M:
A
80
G
M:
C
85
T
M:
A
88
G
M:
C
92
T
M:
A
107
G
M:
A
112
G
M:
A
117
G
M:
C
119
T
M:
C
126
T
M:
A
128
G
M:
G
136
A
Show more
S
S:
A
5
C
S:
A
7
T
S:
A
11
G
S:
G
15
T
S:
T
48
C
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
G
91
A
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
182
C
S:
C
187
A
Show more
Deletions
L:11966, L:11967, L:11981, L:11982, L:12044-12047, M:3, M:5289-5299, S:1615
Insertions
ins_S:12:TAAGCAGGGTCGGGCCTGGTTAGT, ins_S:1672:TTTTGTTTTTCAGGACGCTTTGCAAGGGTAGCTGGGGTGAATTTGCACCAAGGCAGCAGCATAGTCGCCGCAGTT, ins_S:1577:A, ins_S:7:TTTGCCCCTGAACGCGCCCGATCTCGTCTGATCTCG, ins_S:1530:T, ins_S:0:ATTTCCTTTCTTGAACTCTTCAAACCACTTGTTCATTTCATCTTTGTTATTCACCTCGATTTTAT, ins_S:17:GATGGGAGGG, ins_M:5361:CATCCACCGC, ins_M:0:TGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTA...
Show more
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
Y
7
C
GPC:
I
9
V
GPC:
C
15
Y
GPC:
H
24
S
GPC:
R
28
E
GPC:
D
33
N
GPC:
T
34
V
GPC:
M
35
V
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
P
GPC:
P
47
L
GPC:
S
49
G
GPC:
A
51
T
GPC:
S
53
P
GPC:
I
54
V
GPC:
P
58
S
GPC:
S
68
G
Show more
NP
NP:
R
15
K
NP:
D
44
E
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
N
399
D
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
T
54
K
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
E
167
G
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
None
Insertions
None
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