This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PBVK.1

India/LOC_000PBVK.1/2015
P. D. Yadav, D. Y. Patil, A. M. Shete, P. Kokate, P. Goyal, S. Jadhav, S. Sinha, D. Zawar, S. K. Sharma, A. Kapil, D. K. Sharma, K. J. Upadhyay & D. T. Mourya

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2015
Earliest release date
2016-11-25
Sampling location
India
Isolate name
NIV151149

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-11-25
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Submission details

Submission ID
KT384384.1.L/KT384403.1.M/KT384401.1.S
Submitting group
Date submitted
2026-06-27 11:41:19 UTC
Date released
2026-06-27 11:45:09 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
162
Length S segment
1449 (80.2%)
Total SNPs L segment
674
Total deleted nucs L segment
1612
Total frame shifts L segment
1
Frame shifts L segment
RdRp:1252-3946(nt:3828-11914)
Length L segment
5233 (56.5%)
Length M segment
821 (15%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • C415T
  • A416G
  • T442A
  • C445T
  • T466C
  • C475T
  • C481T
  • T499C
  • T509C
  • A523G
  • G538T
  • T550G
  • G553A
  • G556A
  • A563G
  • A565T
  • A574G
  • G578A

S segment

  • T63C
  • A65G
  • A84G
  • A93G
  • A98T
  • A102G
  • C150T
  • G153A
  • T156C
  • T166C
  • A173G
  • G174A
  • G180A
  • A186G
  • C192T
  • C201T
  • G231A
  • A252C
Deletions

L segment

2216-3827
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

NP

  • NP:N9S
  • NP:Y20F
  • NP:K45R
  • NP:V83A
  • NP:D116E
  • NP:A124S
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:K286N
  • NP:A307V
  • NP:E322D
  • NP:Q405L

RdRp

  • RdRp:I114V
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:I223V
  • RdRp:N236S
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:R302K
  • RdRp:D499N
  • RdRp:I505T
  • RdRp:A508V
  • RdRp:N510S
  • RdRp:V700I
  • RdRp:R704K
Deletions

RdRp

RdRp:714-1251
Insertions
N/A

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