This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAEH.1

Italy/LOC_000PAEH.1/2023-09-15
L. Pellegrinelli, C. Galli & E. Pariani

University of Milan, Department of Biomedical Sciences for Health

Sample details

Collection date
2023-09-15
Earliest release date
2025-10-18
Sampling location
Italy
Isolate name
3017-2023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-01 15:12insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-10-18
NCBI update date
2025-10-18
INSDC accession

Host

Host

Submission details

Submission ID
PQ483176.1
Submitting group
Date submitted
2026-04-01 15:12:22 UTC
Date released
2026-04-01 15:41:16 UTC

Clade

Clade EV-D68
B3

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
61
Total deleted nucs
3
Length
343 (4.7%)
Variant
False

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • T2526G
  • C2529T
  • C2550T
  • A2568G
  • G2577A
  • T2580C
  • G2586A
  • G2589C
  • G2592A
  • G2595T
  • T2596C
  • G2604A
  • T2613C
  • G2614A
  • G2619A
  • C2625T
  • C2626T
  • A2628G
Deletions

2812-2814
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

VP1

  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95T
  • VP1:G97Q
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:S145N
  • VP1:M148V
Deletions

VP1

VP1:144
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue