This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PADK.1

Display Name: Viet_Nam/LOC_000PADK.1/2005
P. V. Tu, N. T. Thao, D. Perera, T. K. Huu, N. T. Tien, T. C. Thuong, O. M. How, M. J. Cardosa & P. C. McMinn

Sample details

Collection date
2005
Collection date (lower bound)
2005-01-01
Collection date (upper bound)
2005-12-31
Earliest release date
2007-11-01
Collection country
Viet Nam
Collection subdivision level 1
South Vietnam
Isolate name
1277S/VNM/05

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-12 16:55insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Cardosa M.J., University Malaysia Sarawak, Institute of Health & Community Medicine, Kota Samarahan, Sarawak, 94300

INSDC

NCBI release date
2007-11-01
NCBI update date
2016-07-26
INSDC accession

Alignment and QC metrics

Length
891
Total SNPs
166
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.03%
Total stop codons
0

Submission details

Submission ID
AM490148.1
Submitting group
Date submitted
2025-12-12 16:54:37 UTC
Date released
2025-12-12 16:56:54 UTC

Clade

Clade EV-A71
C5

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • A2447G
  • A2453G
  • G2465A
  • C2468T
  • A2477G
  • T2480C
  • G2482T
  • T2483C
  • A2491G
  • G2492A
  • C2503A
  • T2507C
  • T2508C
  • T2513G
  • C2519T
  • C2527A
  • A2528G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:S15I
  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I262V
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A
    • Deletions
    None
    Insertions
    None

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