This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PADK.1

Russia/LOC_000PADK.1/2016
V. G. Dedkov, M. Y. Shchelkanov, B. T. Bushkieva, T. A. Rudenko, O. V. Kurdyukova, I. V. Galkina, M. V. Sapotsky, E. A. Blinova, S. D. Dzhambinov, G. A. Shipulin & M. V. Safonova

Central Research Institute for Epidemiology

Sample details

Collection date
2016
Earliest release date
2017-09-17
Sampling location
Russia (Kalmykia)
Isolate name
Russia_Kalmykia_Shch_2_2016

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-13 15:41insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-17
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
KY982865.1.L/KY982867.1.M/KY982869.1.S
Submitting group
Date submitted
2026-03-13 15:41:04 UTC
Date released
2026-03-13 15:47:29 UTC

Host

Host

Lineage

Segment S Lineage
V

Files

annotations

Alignment and QC

Total SNPs M
1053
Total inserted nucs M
1
Total deleted nucs M
3
Length M
5290 (98.6%)
Variant M
False
Total SNPs L
1329
Total inserted nucs L
26
Length L
12111 (99.8%)
Variant L
False
Total SNPs S
260
Total inserted nucs S
1
Length S
1670 (99.8%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • A35G
  • A42T
  • G43C
  • T49C
  • A53G
  • G57A
  • T58C
  • C59T
  • C63T
  • C64G
  • T66C
  • A72G
  • A73T
  • C76A
  • A91G
  • G93A
  • C100T
  • A109G

M

  • A61T
  • A64T
  • T67C
  • T68C
  • A69G
  • T71A
  • G76C
  • A80G
  • T83C
  • G84A
  • C85T
  • T86C
  • C92T
  • T100C
  • T102C
  • C103T
  • A108G
  • A112G

S

  • A24T
  • T46A
  • T49C
  • A50T
  • G54A
  • T79C
  • A81G
  • G99A
  • G100A
  • A109G
  • C115T
  • T133C
  • G134A
  • C142T
  • T157C
  • C166T
  • G171A
  • T175A
Deletions

M

333-335
Insertions

L

ins_67:C, ins_11928:CT, ins_12108:CATTATTTGCAGGGTGTGGGGGG

M

ins_5170:C

S

ins_1579:C

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15S
  • GPC:E19G
  • GPC:T20A
  • GPC:S23Q
  • GPC:H24S
  • GPC:E26A
  • GPC:R28E
  • GPC:K31G
  • GPC:D33N
  • GPC:M35T
  • GPC:T37V
  • GPC:D40T

NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:V193M
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:S301G
  • NP:A307P

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:A202V
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:I223L
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:N448S
Deletions

GPC

GPC:77
Insertions
N/A

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