This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9VM.1

Display Name: Turkey/LOC_000P9VM.1/2013-05
K. Ergunay, E. Dincer, S. Kar, N. Emanet, D. Yalcinkaya, P. F. Polat Dincer, A. Brinkmann, S. Hacioglu, A. Nitsche, A. Ozkul, Y. M. Linton & C. Ergunay

Sample details

Collection date
2013-05
Collection date (lower bound)
2013-05-01
Collection date (upper bound)
2013-05-31
Earliest release date
2020-08-25
Collection country
Turkey
Isolate name
pool20

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:28insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Hacettepe University Faculty of Medicine, Department of Medical Microbiology Virology Unit

INSDC

NCBI release date
2020-08-25
INSDC accession L

Host

Host taxon id
Host name scientific
Hyalomma marginatum

Alignment and QC metrics L

Length L
477
Total SNPs L
48
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
3.94%

Submission details

Submission ID
MN811040.1.L
Submitting group
Date submitted
2025-09-17 15:28:31 UTC
Date released
2025-09-17 15:32:29 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:C6706G
  • L:C6715T
  • L:C6718T
  • L:A6724G
  • L:A6730G
  • L:G6733T
  • L:G6748A
  • L:A6751G
  • L:C6757T
  • L:T6760A
  • L:C6766T
  • L:T6769C
  • L:A6784T
  • L:T6800C
  • L:G6805A
  • L:A6808T
  • L:A6811G
  • L:A6850G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:S2210R
  • RdRp:A2330T
  • RdRp:H2366P
    • Deletions
    None
    Insertions
    None

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