This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9ST.1

Display Name: Taiwan/LOC_000P9ST.1/2007
Y.-P. Huang, L.-C. Hsu & H.-S. Wu

Sample details

Collection date
2007
Collection date (lower bound)
2007-01-01
Collection date (upper bound)
2007-12-31
Earliest release date
2009-07-31
Collection country
Taiwan
Isolate name
2007-04741

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-07 17:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control, Department of Health, Research and Diagnostic Center

INSDC

NCBI release date
2009-07-31
NCBI update date
2016-07-26
INSDC accession

Alignment and QC metrics

Length
615
Total SNPs
132
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
8.30%
Total stop codons
0

Submission details

Submission ID
EU908110.1
Submitting group
Date submitted
2026-01-07 17:00:16 UTC
Date released
2026-01-07 17:02:17 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • A2640G
  • C2643T
  • C2644A
  • G2646A
  • T2670A
  • A2673G
  • C2679A
  • A2680G
  • G2682C
  • C2688G
  • C2691T
  • T2694C
  • C2697T
  • T2700C
  • A2703T
  • A2706C
  • A2709T
  • C2710T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    VP1

  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:I179V
  • VP1:L183M
  • VP1:A213E
  • VP1:P215L
  • VP1:S217A
  • VP1:A220L
    • Deletions
    None
    Insertions
    None

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