This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9ST.1

Display Name: Turkey/LOC_000P9ST.1/2017-07
K. Ergunay, E. Dincer, S. Kar, N. Emanet, D. Yalcinkaya, P. F. Polat Dincer, A. Brinkmann, S. Hacioglu, A. Nitsche, A. Ozkul, Y. M. Linton & C. Ergunay

Sample details

Collection date
2017-07
Collection date (lower bound)
2017-07-01
Collection date (upper bound)
2017-07-31
Earliest release date
2020-08-25
Collection country
Turkey
Isolate name
CAP12

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:28insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Hacettepe University Faculty of Medicine, Department of Medical Microbiology Virology Unit

INSDC

NCBI release date
2020-08-25
INSDC accession L
INSDC accession S

Host

Host taxon id
Host name scientific
Rhipicephalus bursa

Alignment and QC metrics S

Length S
1573
Total SNPs S
293
Total inserted nucs S
10
Total deleted nucs S
20
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
94.68%

Alignment and QC metrics L

Length L
12122
Total SNPs L
2570
Total inserted nucs L
118
Total deleted nucs L
80
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
2
Frame shifts L
RdRp:778-780(nt:2406-2416),RdRp:786-789(nt:2431-2442)
Completeness L
99.80%

Submission details

Submission ID
MN811031.1.L/MN811034.1.S
Submitting group
Date submitted
2025-09-17 15:28:31 UTC
Date released
2025-09-17 15:32:29 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:C27T
  • L:G32A
  • L:A35G
  • L:A36T
  • L:G43C
  • L:T47A
  • L:T58C
  • L:T62G
  • L:C63A
  • L:T65C
  • L:G71T
  • L:C76A
  • L:C82G
  • L:A91G
  • L:C94T
  • L:T106C
  • L:A113C
  • L:T115G

    • S

  • S:C38A
  • S:T49A
  • S:G54A
  • S:A61G
  • S:G67A
  • S:T79C
  • S:A81G
  • S:A85G
  • S:T88C
  • S:G91T
  • S:A92C
  • S:G99A
  • S:A118G
  • S:A130G
  • S:C154T
  • S:T157C
  • S:C166T
  • S:G169A
    • Deletions
    L:48-55, L:1571-1573, L:2384-2386, L:2401-2405, L:2422-2424, L:2443-2447, L:2453-2455, L:3173-3175, L:11777-11788, L:11838-11840, L:11930-11935, L:11961-11966, L:11979, L:12025-12035, L:12070-12075, L:12092, L:12093, S:1507-1511, S:1529, S:1530, S:1552-1554, S:1578-1585, S:1592, S:1593
    Insertions
    ins_L:39:TGGTGGCAT, ins_L:1567:GAC, ins_L:2391:CAC, ins_L:2416:CTTCA, ins_L:2430:TGAGCCCGGCA, ins_L:3178:GCA, ins_L:11771:CAGCAGCGCCTG, ins_L:11851:CAA, ins_L:11921:TTTGA, ins_L:11954:CATAGAATTCT, ins_L:11958:ACC, ins_L:11975:C, ins_L:11991:C, ins_L:11995:CAATCTGCG, ins_L:12000:GGA, ins_L:12003:GTGTCATGGTCAAT, ins_L:12014:CTGTTCAC, ins_L:12050:CTGCCTCATA, ins_L:12108:GGGT,...

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N9S
  • NP:E12D
  • NP:M13L
  • NP:R15K
  • NP:S39N
  • NP:V40A
  • NP:F48Y
  • NP:A100T
  • NP:G101S
  • NP:V117I
  • NP:T124S
  • NP:G125S
  • NP:V141I
  • NP:A146T
  • NP:V163L
  • NP:M164V
  • NP:S165P
  • NP:L179I

    • RdRp

  • RdRp:D2E
  • RdRp:I13L
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:L64I
  • RdRp:E66K
  • RdRp:S67T
  • RdRp:R70Q
  • RdRp:Q74L
  • RdRp:E75D
  • RdRp:R80K
  • RdRp:K91Q
  • RdRp:L94S
  • RdRp:A122T
  • RdRp:S124N
  • RdRp:D135E
    • Deletions
    RdRp:776, RdRp:777, RdRp:790, RdRp:791
    Insertions
    None

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