This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9M3.1

unknown/SHAS_235_2009/2009-08-25
N. K. Duggal, W. K. Reisen, Y. Fang, R. M. Newman, X. Yang, G. D. Ebel, A. C. Brault & A. Brault

Centers for Disease Control and Prevention, Division of Vector-Borne Infectious Diseases

Sample details

Collection date
2009-08-25
Earliest release date
2015-08-08
Isolate name
SHAS_235_2009

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2015-08-08
NCBI update date
2015-08-08
INSDC accession

Host

Host

Submission details

Submission ID
KR349019.1
Submitting group
Date submitted
2026-09-09 16:34:10 UTC
Date released
2026-09-09 16:48:32 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
57
Length
10135 (91.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:M88I
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS3:N485I
  • NS4A:V85T
  • NS4B:I245V
  • NS5:K177R
  • NS5:K314R
  • NS5:K503R
  • capsid:T76I
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:T70I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C323T
  • A630G
  • C660T
  • C672T
  • C674T
  • A744T
  • A1320G
  • C1329T
  • T1442C
  • C1465T
  • T1945C
  • G1962A
  • C1974T
  • C2466T
  • G2934T
  • T3399C
  • C3570T
  • T3729C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2B

  • NS2B:M88I

NS3

  • NS3:N485I

NS4A

  • NS4A:A85T

NS4B

  • NS4B:I245V

NS5

  • NS5:K314R
  • NS5:K503R

capsid

  • capsid:T76I

env

  • env:V159A
  • env:L167F

prM

  • prM:T70I
Deletions
N/A
Insertions
N/A

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