This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
CCHF (Multi-Ref)
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
CCHF (Multi-Ref)
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000P9M3.1
Download
Download FASTA
Download metadata TSV
Senegal/LOC_000P9M3.1/1969
J. W. Koehler,
K. L. Delp,
B. J. Kearney,
T. A. Conrad,
R. J. Schoepp,
A. R. Garrison,
L. A. Altimura,
C. A. Rossi &
T. D. Minogue
USAMRIID, DSD
Sample details
Collection date
1969
Earliest release date
2017-04-02
Sampling location
Senegal
Isolate name
UCCR4416
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-27 15:36
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-04-02
INSDC accession L
KY484025.1
INSDC accession M
KY484026.1
INSDC accession S
KY484027.1
Submission details
Submission ID
KY484025.1.L/KY484026.1.M/KY484027.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-27 15:36:26 UTC
Date released
2026-02-27 15:39:16 UTC
Host
Host
Hyalomma truncatum
Files
Annotations
LOC_000P9M3.1.embl
Alignment and QC
Total SNPs M
1241
Total inserted nucs M
3
Total deleted nucs M
16
Length M
5386 (100%)
Variant M
False
Total SNPs S
324
Total inserted nucs S
14
Total deleted nucs S
8
Length S
1686 (100%)
Variant S
False
Total SNPs L
226
Total inserted nucs L
52
Length L
12160 (100%)
Variant L
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
MK299338.1
references
Substitutions
L segment
T
65
C
T
70
C
G
93
A
T
254
A
G
277
C
A
298
G
G
304
A
C
313
T
T
340
C
T
550
G
G
553
A
G
619
A
C
673
T
T
781
C
C
904
T
G
946
A
G
961
A
A
1003
G
Show more
M segment
C
3
T
A
5
T
G
6
C
C
7
A
G
8
A
C
9
A
C
10
G
G
11
A
C
15
A
C
17
T
C
18
T
C
21
G
G
24
A
G
29
A
C
30
G
G
31
T
G
32
A
G
36
A
Show more
S segment
C
22
T
T
38
C
A
48
T
G
72
A
G
80
A
C
87
T
T
90
G
G
99
A
A
108
G
T
126
C
C
141
T
T
153
C
C
156
T
C
159
T
T
162
C
A
168
G
T
171
C
G
172
A
Show more
Deletions
M segment
5213-5217, 5245, 5271-5278, 5365, 5366
S segment
1520-1522, 1636-1640
Insertions
L segment
ins_12108:TTCATCATCATCGTTATTATCTTGGGGTGTGGGGGGAACGATTTCTTTGAGA
M segment
ins_39:GTT
S segment
ins_0:T, ins_1580:TTTACAGTTAC, ins_1680:GA
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
MK299338.1
references
Substitutions
GPC
GPC:
L
2
F
GPC:
F
3
L
GPC:
E
6
K
GPC:
H
7
F
GPC:
I
11
T
GPC:
V
14
F
GPC:
I
18
L
GPC:
S
21
G
GPC:
L
25
V
GPC:
D
27
S
GPC:
E
28
G
GPC:
A
29
G
GPC:
S
33
T
GPC:
M
35
S
GPC:
G
38
T
GPC:
A
39
T
GPC:
T
40
L
GPC:
A
41
I
Show more
NP
NP:
S
9
N
NP:
D
12
E
NP:
V
40
M
NP:
Y
48
F
NP:
S
52
G
NP:
T
65
S
NP:
F
73
Y
NP:
K
91
R
NP:
S
101
G
NP:
I
117
V
NP:
S
124
A
NP:
S
125
N
NP:
I
141
V
NP:
T
146
A
NP:
A
154
S
NP:
L
163
V
NP:
V
164
M
NP:
P
165
S
Show more
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
I
505
T
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
G
1047
E
RdRp:
I
1085
V
RdRp:
K
1167
R
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
S
1436
N
RdRp:
T
1449
N
RdRp:
P
1660
T
RdRp:
T
1675
N
RdRp:
N
1799
S
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue