This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Test organism (without consensus sequences)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
Browse
Submit
SeqSets
Login
Loculus
Browse
Submit
SeqSets
Login
Docs
API docs
LOC_000P8VN.1
Download
Download FASTA
Download metadata TSV
Display Name: Pakistan/LOC_000P8VN.1/2022-06
M. Umair,
Z. Rehman,
M. Salman,
A. Ikram,
S. A. Haider,
M. Ammar,
Q. Ali,
R. Hakim &
S. Ansari
Submission details
Submission ID
OP345196.1.L/OP345195.1.M/OP345194.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-01 21:35:50 UTC
Date released
2025-07-01 21:39:43 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-07-01 21:35
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Health, Department of Virology
Alignment and QC metrics L
Completeness L
97.77%
Frame shifts L
RdRp:792-795(nt:2450-2461)
Length L
11838
Total ambiguous nucs L
0
Total deleted nucs L
1
Total frame shifts L
1
Total inserted nucs L
1
Total SNPs L
1555
Total unknown nucs L
0
Alignment and QC metrics M
Completeness M
94.37%
Length M
5055
Total ambiguous nucs M
0
Total deleted nucs M
9
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
620
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
86.66%
Length S
1449
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
165
Total unknown nucs S
0
Sample details
Earliest release date
2022-10-02
Collection country
Pakistan
Collection date
2022-06
Collection date (lower bound)
2022-06-01
Collection date (upper bound)
2022-06-30
Isolate name
NIH-04
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
OP345196.1
INSDC accession M
OP345195.1
INSDC accession S
OP345194.1
NCBI release date
2022-10-02
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
C
85
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
C
117
A
L:
A
124
G
L:
T
131
A
L:
T
139
C
L:
C
148
T
L:
T
151
C
L:
T
154
C
L:
T
160
C
L:
G
190
A
L:
C
208
T
L:
T
229
C
L:
T
250
C
L:
T
253
C
L:
T
254
A
Show more
M
M:
A
107
G
M:
A
117
G
M:
C
119
T
M:
C
120
T
M:
T
122
C
M:
A
128
G
M:
G
131
A
M:
T
137
C
M:
G
143
A
M:
A
146
G
M:
G
147
A
M:
C
153
A
M:
T
155
C
M:
T
159
C
M:
A
169
G
M:
A
170
G
M:
A
174
G
M:
G
175
A
Show more
S
S:
G
67
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
A
109
G
S:
A
118
G
S:
C
166
T
S:
G
169
A
S:
T
172
C
S:
C
178
A
S:
T
182
C
S:
G
190
A
S:
G
196
A
S:
T
199
C
S:
C
208
T
S:
C
217
T
S:
G
229
A
S:
C
235
T
Show more
Deletions
L:2449, M:5145-5153
Insertions
ins_L:2461:G
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
9
V
GPC:
L
10
F
GPC:
E
19
K
GPC:
H
21
N
GPC:
S
23
P
GPC:
E
26
G
GPC:
R
28
E
GPC:
K
31
N
GPC:
D
33
H
GPC:
T
34
V
GPC:
G
39
D
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
P
GPC:
S
53
P
GPC:
I
54
V
GPC:
L
56
P
GPC:
T
64
S
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
83
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
N
236
S
RdRp:
D
264
N
Show more
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue