This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NKNT.2

Display Name: Japan/LOC_000NKNT.2
K. Mizuta, Y. Aoki, Y. Matoba, K. Yahagi, T. Itagaki, F. Katsushima, Y. Katsushima, S. Ito, S. Hongo & Y. Matsuzaki

Sample details

Collection date (upper bound)
2014-05-23
Earliest release date
2014-05-23
Collection country
Japan
Collection subdivision level 1
Yamagata
Isolate name
1330-Yamagata-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-24 08:53insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Department of Microbiology; 1-6-6 Tokamachi, Yamagata, Yamagata 990-0031

INSDC

NCBI release date
2014-05-23
NCBI update date
2014-10-01
INSDC accession

Alignment and QC metrics

Length
891
Total SNPs
152
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.03%
Total stop codons
0

Submission details

Submission ID
AB936460.1
Submitting group
Date submitted
2025-12-25 04:08:03 UTC
Date released
2025-12-25 04:09:14 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • C2444T
  • A2447G
  • G2459A
  • G2465A
  • C2468T
  • T2471C
  • T2480C
  • T2489C
  • A2491G
  • G2492A
  • C2501T
  • C2503A
  • T2508C
  • T2513G
  • C2525T
  • C2527A
  • A2528G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A
    • Deletions
    None
    Insertions
    None

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