This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (without consensus sequences)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000NKNT.1
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Download FASTA
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Display Name: Russia/LOC_000NKNT.1/2015-07-21
Volynkina,
A.; Kotenev,
E.; Kolosov,
A.
Submission details
Submission ID
MN624797.1.L/MN624566.1.M/MN624334.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-08 15:37:02 UTC
Date released
2025-05-08 15:39:49 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-05-08 15:37
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory on Natural Focal Infections
Alignment and QC metrics L
Completeness L
3.61%
Length L
437
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
43
Total unknown nucs L
0
Alignment and QC metrics M
Completeness M
8.11%
Length M
435
Total ambiguous nucs M
0
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
79
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
42.22%
Length S
538
Total ambiguous nucs S
0
Total deleted nucs S
168
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
82
Total unknown nucs S
0
Sample details
Earliest release date
2020-07-27
Collection country
Russia
Collection date
2015-07-21
Collection date (lower bound)
2015-07-21
Collection date (upper bound)
2015-07-21
Isolate name
205-ROS/HU-2015
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
MN624797.1
INSDC accession M
MN624566.1
INSDC accession S
MN624334.1
NCBI release date
2020-07-27
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
131
A
L:
C
148
T
L:
T
151
C
L:
T
154
C
L:
T
160
C
L:
T
163
C
L:
T
202
C
L:
T
218
C
L:
T
229
C
L:
A
240
C
L:
T
241
C
L:
T
253
C
L:
T
254
A
L:
G
264
A
L:
C
265
T
L:
A
268
G
L:
C
276
T
L:
C
284
A
Show more
M
M:
C
4644
T
M:
T
4649
C
M:
C
4652
T
M:
T
4661
A
M:
A
4664
G
M:
A
4667
G
M:
C
4671
T
M:
T
4676
C
M:
A
4694
T
M:
C
4697
T
M:
A
4713
G
M:
A
4730
G
M:
A
4736
G
M:
T
4742
A
M:
T
4743
C
M:
G
4745
A
M:
C
4748
T
M:
A
4751
G
Show more
S
S:
C
115
T
S:
G
134
A
S:
C
139
T
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
T
175
A
S:
C
178
A
S:
T
182
C
S:
C
187
T
S:
G
189
A
S:
T
199
C
S:
C
217
T
S:
C
244
T
S:
T
250
G
S:
G
262
A
S:
A
268
C
Show more
Deletions
S:647-814
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
1527
Y
GPC:
E
1534
D
GPC:
N
1541
D
GPC:
S
1564
D
GPC:
S
1589
G
GPC:
G
1590
S
GPC:
I
1591
V
GPC:
N
1594
S
GPC:
V
1595
F
GPC:
M
1597
V
GPC:
F
1600
L
GPC:
I
1607
V
GPC:
I
1610
V
GPC:
R
1618
K
GPC:
K
1652
R
GPC:
N
1655
S
GPC:
K
1661
R
NP
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
RdRp
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
Deletions
None
Insertions
None
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