This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NKNT.1

USA/LOC_000NKNT.1/2008-09-08
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2008-09-08
Earliest release date
2016-08-02
Sampling location
USA (Erie Co., NY)
Isolate name
WNV-1/Culex/USA/08141542/2008

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-23 00:20insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
KX547436.1
Submitting group
Date submitted
2026-02-23 00:20:09 UTC
Date released
2026-02-23 00:30:39 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
57
Length
10787 (97.8%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T468C
  • A630G
  • C660T
  • G792A
  • C849T
  • T1062C
  • C1431T
  • T1442C
  • T1452C
  • C1465T
  • A1512G
  • C1620T
  • T2394C
  • C2466T
  • T2616C
  • G2742A
  • C2784T
  • C3381T
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS4B

  • NS4B:K8R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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