This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NKNT.1

Display Name: Japan/LOC_000NKNT.1/2010-07-26
T. Fujimoto, M. Enomoto & D. Takai

Sample details

Collection date
2010-07-26
Collection date (lower bound)
2010-07-26
Collection date (upper bound)
2010-07-26
Earliest release date
2011-08-04
Collection country
Japan
Collection subdivision level 1
Hyogo
Isolate name
5316/EV71/Hyogo/2010

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-12 18:23insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Infectious Disease Surveillance Center; 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640

INSDC

NCBI release date
2011-08-04
INSDC accession EV-A71

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics EV-A71

Length EV-A71
544
Total SNPs EV-A71
118
Total inserted nucs EV-A71
2
Total deleted nucs EV-A71
0
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
0
Total frame shifts EV-A71
0
Completeness EV-A71
7.32%

Submission details

Submission ID
AB650490.1.EV-A71
Submitting group
Date submitted
2025-11-12 18:23:12 UTC
Date released
2025-11-12 18:26:53 UTC

Clade

Clade EV-A71
C2

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • A642G
  • C647G
  • A648C
  • T657A
  • A663T
  • T666C
  • C667T
  • C669A
  • G673A
  • A678T
  • A682G
  • C683T
  • T687A
  • C690A
  • A691T
  • T693A
  • T696G
  • G697A
    • Deletions
    None
    Insertions
    ins_739:TC

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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