This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NKNT.1

Turkey/LOC_000NKNT.1/2009
A. T. Kalaycioglu, R. Durmaz, O. Unaldi, Y. Uyar, A. Ozkul, G. Korukluoglu & M. Ertek

Refik Saydam National Public Health Agency, Molecular Microbiology Research and Application Laboratory

Sample details

Collection date
2009
Earliest release date
2011-09-19
Sampling location
Turkey
Isolate name
Cankiri 1079-09

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2011-09-19
INSDC accession M segment

Host

Host

Submission details

Submission ID
JF523544.1.M
Submitting group
Date submitted
2026-09-11 12:57:01 UTC
Date released
2026-09-11 12:59:31 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
87
Length M segment
526 (9.64%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • A1905T
  • C1909T
  • C1910T
  • T1921C
  • G1924A
  • A1927G
  • T1939C
  • G1942A
  • G1945A
  • A1963G
  • T1977C
  • A1978T
  • T1981C
  • T1984C
  • G1999A
  • G2011A
  • T2020A
  • C2023T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:Y606F
  • GPC:V630A
  • GPC:V663I
  • GPC:K669H
  • GPC:L694F
  • GPC:L707F
  • GPC:I711L
  • GPC:F713Y
  • GPC:L714S
  • GPC:F718I
  • GPC:R724K
  • GPC:F725I
  • GPC:T742A
Deletions
N/A
Insertions
N/A

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