This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NKNT.1

Display Name: USA/LOC_000NKNT.1/2017-08-11
N. Grubaugh, N. Matteson, K. Gangavarupa, U. Balasuriya, R. Christofferson, T. Harden, Z. Mekuria, L. Peak, A. Roy, K. Strother & K. Andersen

Sample details

Collection date
2017-08-11
Collection date (lower bound)
2017-08-11
Collection date (upper bound)
2017-08-11
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
WBR, Louisiana

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex quinquefasciatus

Alignment and QC metrics

Length
10302
Total SNPs
88
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
957
Total frame shifts
0
Completeness
84.73%
Total stop codons
0

Submission details

Submission ID
OQ721816.1
Submitting group
Date submitted
2025-10-13 08:43:05 UTC
Date released
2025-10-13 09:02:06 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T428C
  • C450T
  • A544T
  • A630G
  • C1056T
  • A1341T
  • T1368C
  • A1401G
  • T1442C
  • C1465T
  • C1572T
  • C1750T
  • T1965C
  • T1998C
  • A2097C
  • A2139G
  • C2371T
  • T2439C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F
  • NS2A:I176T
  • NS2A:R188K

    • NS3

  • NS3:N105S
  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • NS5

  • NS5:N281S

    • capsid

  • capsid:I111T

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:T27S
    • Deletions
    None
    Insertions
    None

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