This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NKNT.1

Display Name: Greece/LOC_000NKNT.1/2013
A. Papa, A. Kontana, K. Tsioka, I. Chaligiannis & S. Sotiraki

Submission details

Submission ID
MF004265.1.S
Submitting group
Date submitted
2025-07-18 15:35:17 UTC
Date released
2025-07-18 15:37:30 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-18 15:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Aristotle University of Thessaloniki, Dept. of Microbiology

Alignment and QC metrics S

Completeness S
13.16%
Length S
220
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
38
Total unknown nucs S
0

Sample details

Earliest release date
2017-09-26
Collection country
Greece
Collection date
2013
Collection date (lower bound)
2013-01-01
Collection date (upper bound)
2013-12-31
Isolate name
GR-1391

Host

Host name scientific
Capra hircus
Host taxon id

INSDC

INSDC accession S
NCBI release date
2017-09-26

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C310T
  • S:A322G
  • S:A325G
  • S:A331G
  • S:A337G
  • S:A349G
  • S:G353T
  • S:T364C
  • S:G367A
  • S:C370T
  • S:A379G
  • S:G381A
  • S:T382C
  • S:T385C
  • S:A386G
  • S:A394G
  • S:C400T
  • S:C403T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
    • Deletions
    None
    Insertions
    None

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