This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NKNT.1

Display Name: Japan/LOC_000NKNT.1/2011-04-04
H. Masumoto, A. Minami, H. Noda, M. Eguchi, Y. Furukawa, K. Tsuruta & H. Yoshida

Sample details

Collection date
2011-04-04
Collection date (lower bound)
2011-04-04
Collection date (upper bound)
2011-04-04
Earliest release date
2011-07-29
Collection country
Japan
Collection subdivision level 1
Saga
Isolate name
11s87/Saga/JPN/2011

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-28 16:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Virology ll; Gakuen 4-7-1, Musashimurayama, Tokyo 2080011

INSDC

NCBI release date
2011-07-29

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
337
Total SNPs
73
Total inserted nucs
0
Total deleted nucs
1638
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
26.64%

Submission details

Submission ID
AB649227.1.CV-A16
Submitting group
Date submitted
2025-11-28 16:34:59 UTC
Date released
2025-11-28 16:38:18 UTC

Clade

Clade CV-A16
B

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2592A
  • C2594T
  • A2595G
  • C2601G
  • C2604G
  • C2607G
  • T2610G
  • A2619C
  • C2620A
  • A2621G
  • G2622T
  • T2625C
  • G2626A
  • T2631C
  • T2634C
  • A2637T
  • A2640G
  • C2643T
    • Deletions
    2509-2589, 2910-4061, 4069-4473
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue