This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NKNT.1

unknown/SHAS_227_2007/2007-07-26
N. K. Duggal, W. K. Reisen, Y. Fang, R. M. Newman, X. Yang, G. D. Ebel, A. C. Brault & A. Brault

Centers for Disease Control and Prevention, Division of Vector-Borne Infectious Diseases

Sample details

Collection date
2007-07-26
Earliest release date
2015-08-08
Isolate name
SHAS_227_2007

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2015-08-08
NCBI update date
2015-08-08
INSDC accession

Host

Host

Submission details

Submission ID
KR349018.1
Submitting group
Date submitted
2026-05-22 14:37:36 UTC
Date released
2026-05-22 14:52:43 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
48
Length
10135 (91.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • C687T
  • T1442C
  • C1465T
  • A1587G
  • T1656C
  • T2421C
  • C2466T
  • G3471A
  • C3570T
  • G3708T
  • T3792C
  • C4107T
  • A4146G
  • C4272T
  • T4320C
  • T4542C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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