This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M0KL.1

Display Name: USA/LOC_000M0KL.1/2014-07-07
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

Sample details

Collection date
2014-07-07
Collection date (lower bound)
2014-07-07
Collection date (upper bound)
2014-07-07
Earliest release date
2019-01-20
Collection country
USA
Collection subdivision level 1
Martinez,California

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-19 08:32insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10302
Total SNPs
86
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
MH507797.1
Submitting group
Date submitted
2025-12-19 08:32:21 UTC
Date released
2025-12-19 08:44:49 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T477C
  • A630G
  • C660T
  • C732T
  • A1380G
  • T1442C
  • G1455A
  • C1465T
  • A1512G
  • A1566G
  • C1569T
  • C1878T
  • T1971C
  • T2250C
  • C2371T
  • C2466T
  • T3160C
  • C3570T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS2B

  • NS2B:T34S

    • NS3

  • NS3:I162M

    • NS5

  • NS5:T703I

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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