This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M0C1.1

Display Name: USA/LOC_000M0C1.1/2017-06-29
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

Sample details

Collection date
2017-06-29
Collection date (lower bound)
2017-06-29
Collection date (upper bound)
2017-06-29
Earliest release date
2019-01-20
Collection country
USA
Collection subdivision level 1
Bellflower,California
Isolate name
WNV/mosquito/Bellflower_CA_USA/2017-06-29/W248

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-28 14:56insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex quinquefasciatus

Alignment and QC metrics

Length
10302
Total SNPs
100
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
MH507824.1
Submitting group
Date submitted
2026-01-28 14:56:35 UTC
Date released
2026-01-28 15:12:49 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C204T
  • C255T
  • C340T
  • A407G
  • C435T
  • A507G
  • A564G
  • A630G
  • T634A
  • C663T
  • C933T
  • T940C
  • C969T
  • C1065T
  • C1170T
  • T1442C
  • C1465T
  • G1482A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:I236V

    • NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:I107T
  • NS2B:V120I

    • NS5

  • NS5:V49I
  • NS5:P108S
  • NS5:K314R

    • capsid

  • capsid:K104R

    • env

  • env:V159A
  • env:L167F
  • env:T332M

    • prM

  • prM:S57T
    • Deletions
    None
    Insertions
    None

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