This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M0C1.1

Display Name: Thailand/LOC_000M0C1.1/2018-11-21
K. Rojjanadumrongkul, K. Kumthip, P. Khamrin & N. Maneekarn

Sample details

Collection date
2018-11-21
Collection date (lower bound)
2018-11-21
Collection date (upper bound)
2018-11-21
Earliest release date
2020-08-11
Collection country
Thailand
Isolate name
CMH-S181-18

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-14 14:32insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Faculty of Medicine, Chiang Mai University, Department of Microbiology

INSDC

NCBI release date
2020-08-11
INSDC accession CV-A10

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A10

Length CV-A10
222
Total SNPs CV-A10
50
Total inserted nucs CV-A10
0
Total deleted nucs CV-A10
0
Total ambiguous nucs CV-A10
0
Total unknown nucs CV-A10
0
Total frame shifts CV-A10
0
Completeness CV-A10
3.00%

Submission details

Submission ID
MN699164.1.CV-A10
Submitting group
Date submitted
2025-10-14 14:32:52 UTC
Date released
2025-10-14 15:09:04 UTC

Clade

Clade CV-A10
F

Genotype

Genotype
CV-A10

Files

Annotations

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions

  • G2668A
  • G2670T
  • A2676C
  • G2678A
  • T2682C
  • C2688T
  • A2691T
  • A2697T
  • T2701C
  • T2709G
  • T2712A
  • T2718C
  • A2721C
  • C2727T
  • A2730G
  • C2733G
  • C2736T
  • A2742T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the AY421767.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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