This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KZV5.2

Display Name: USA/LOC_000KZV5.2/2020-09-02
N. Grubaugh, N. Matteson, K. Gangavarupa, R. Smith & K. Andersen

Sample details

Collection date
2020-09-02
Collection date (lower bound)
2020-09-02
Collection date (upper bound)
2020-09-02
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Black Hawk, Iowa
Isolate name
WNV/mosquito/BlackHawk-IA-USA/2020-09-02/W1898

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-19 17:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10302
Total SNPs
74
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
896
Total frame shifts
0
Completeness
85.28%
Total stop codons
0

Submission details

Submission ID
OQ721706.1
Submitting group
Date submitted
2025-12-20 06:41:30 UTC
Date released
2025-12-20 06:43:22 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C435T
  • A627G
  • A630G
  • C663T
  • G1125A
  • C1314T
  • T1442C
  • C1465T
  • C1632T
  • C1875T
  • C1974T
  • C2109T
  • C2247T
  • C2304T
  • T2400C
  • G2457A
  • C2466T
  • T2649C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:H252N

    • NS4B

  • NS4B:K8R

    • NS5

  • NS5:Q515K

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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