This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KZV5.1

USA/LOC_000KZV5.1/2020-09-02
N. Grubaugh, N. Matteson, K. Gangavarupa, R. Smith & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2020-09-02
Earliest release date
2023-08-02
Sampling location
USA (Black Hawk, Iowa)
Isolate name
WNV/mosquito/BlackHawk-IA-USA/2020-09-02/W1898

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-27 15:36insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
OQ721706.1
Submitting group
Date submitted
2026-02-27 15:36:10 UTC
Date released
2026-02-27 15:51:26 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
74
Total unknown nucs
896
Length
10302 (85.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:H252N
  • NS3:I356T
  • NS4A:V85A
  • NS4B:K8R
  • NS5:K177R
  • NS5:Q515K
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C435T
  • A627G
  • A630G
  • C663T
  • G1125A
  • C1314T
  • T1442C
  • C1465T
  • C1632T
  • C1875T
  • C1974T
  • C2109T
  • C2247T
  • C2304T
  • T2400C
  • G2457A
  • C2466T
  • T2649C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:H252N

NS4B

  • NS4B:K8R

NS5

  • NS5:Q515K

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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