This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KZV5.1

USA/LOC_000KZV5.1/2012-08-07
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2012-08-07
Earliest release date
2016-08-02
Sampling location
USA (Oswego Co., NY)
Isolate name
WNV-1/Culiseta sp./USA/12370513/2012

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-25 21:18insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
KX547356.1
Submitting group
Date submitted
2026-02-25 21:17:49 UTC
Date released
2026-02-25 21:32:22 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
76
Length
10787 (97.8%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A108G
  • C340T
  • C435T
  • A630G
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • A1847G
  • C2304T
  • A2427G
  • C2466T
  • G3330A
  • T3528C
  • T3844C
  • C3969T
  • T4035C
  • G4088A
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:D59N

    • NS4B

  • NS4B:G104E
  • NS4B:I240M

    • NS5

  • NS5:V793I

    • env

  • env:V159A
  • env:L167F
  • env:K294R
    • Deletions
    N/A
    Insertions
    N/A

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