This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KZV5.1

Display Name: USA/LOC_000KZV5.1/2013-08-12
N. Grubaugh, N. Matteson, K. Gangavarupa, G. Ebel, R. Murrieta, J. Fauver, M. Young & K. Andersen

Sample details

Collection date
2013-08-12
Collection date (lower bound)
2013-08-12
Collection date (upper bound)
2013-08-12
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Larimer, Colorado

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 19:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10302
Total SNPs
70
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
OQ721681.1
Submitting group
Date submitted
2025-09-16 19:40:03 UTC
Date released
2025-09-16 19:54:19 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C435T
  • A630G
  • G948A
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C2109T
  • C2304T
  • C2466T
  • T2475C
  • G2556A
  • C3501T
  • T3528C
  • G3697A
  • C3912T
  • C3969T
  • G4088A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:M29I

    • NS2A

  • NS2A:V58I
  • NS2A:R188K
  • NS2A:L218F

    • NS4B

  • NS4B:S14I
  • NS4B:Q19K
  • NS4B:K24E
  • NS4B:I240M

    • NS5

  • NS5:R26K
  • NS5:A749V

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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