This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0002T6R.1

Kazakhstan/LOC_0002T6R.1/2025
K. T. Maikhin, M. A. Berdikulov, G. K. Mussayeva, T. Karibayev, S. Zhussambayeva, S. K. Samarkhanov, B. Koigeldinova, K. Kalkabayev, B. Momynov, A. Kuanyshbek, A. Shevtsov, D. Kamalova & K. Botagoz

National Center for Biotechnology, Laboratory of Applied Genetics

Sample details

Collection date
2025
Earliest release date
2026-06-14
Sampling location
Kazakhstan (Zhambyl Region, Otyrar District, Village of Merke)
Isolate name
CCHV-2025/16

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-15 08:07insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2026-06-14
INSDC accession S segment

Submission details

Submission ID
PZ269563.1.S
Submitting group
Date submitted
2026-06-15 08:07:06 UTC
Date released
2026-06-15 08:12:00 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
19
Total inserted nucs S segment
1
Total ambiguous nucs S segment
1
Total frame shifts S segment
1
Frame shifts S segment
NP:43-483(nt:166-1488)
Length S segment
474 (26.1%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • C150G
  • A193G
  • A213G
  • C225T
  • A311G
  • G330A
  • A333G
  • T372C
  • T384C
  • T387C
  • A441G
  • G444A
  • C447T
  • G477A
  • A528G
  • C562A
  • A570G
  • G600T
  • T615C
Deletions
N/A
Insertions

S segment

ins_165:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions
N/A
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue