This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0002T5T.1

Kazakhstan/LOC_0002T5T.1/2025
K. T. Maikhin, M. A. Berdikulov, G. K. Mussayeva, T. Karibayev, S. Zhussambayeva, S. K. Samarkhanov, B. Koigeldinova, K. Kalkabayev, B. Momynov, A. Kuanyshbek, A. Shevtsov, D. Kamalova & K. Botagoz

National Center for Biotechnology, Laboratory of Applied Genetics

Sample details

Collection date
2025
Earliest release date
2026-06-14
Sampling location
Kazakhstan (Turkestan Region, Otyr District, Karakonyr Village)
Isolate name
CCHV-2025/5

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-15 08:07insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2026-06-14
INSDC accession S segment

Submission details

Submission ID
PZ269562.1.S
Submitting group
Date submitted
2026-06-15 08:07:06 UTC
Date released
2026-06-15 08:12:00 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
62
Total deleted nucs S segment
3
Total frame shifts S segment
1
Frame shifts S segment
NP:167-171(nt:536-552)
Length S segment
420 (23.4%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • A186G
  • T204C
  • C225T
  • T234A
  • G246A
  • A252C
  • T261C
  • T267C
  • T273C
  • G282C
  • A309G
  • T318G
  • A321G
  • G330A
  • A333G
  • G339A
  • C342A
  • G351A
Deletions

S segment

535, 553, 554
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:D116E
  • NP:N150H
  • NP:P159H
  • NP:Q179L
Deletions

NP

NP:166, NP:172, NP:173
Insertions
N/A

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