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LOC_00004MM.1
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Tajikistan/LOC_00004MM.1
J. D. Meissner,
S. S. Seregin,
S. V. Seregin,
N. V. Yakimenko,
O. I. Vyshemirskii,
S. V. Netesov,
V. S. Petrov &
O. I. Vyshemirski
State Research Center of Virology and Biotechnology 'VECTOR', Laboratory of Virology
Sample details
Earliest release date
2004-11-09
Sampling location
Tajikistan
Isolate name
TADJ/HU8966
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2004-11-09
INSDC accession L segment
AY720893.2
Submission details
Submission ID
AY720893.2.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-05 12:59:02 UTC
Date released
2026-10-05 12:59:33 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Files
Annotations
LOC_00004MM.1.embl
Alignment and QC
Total SNPs L segment
1607
Total inserted nucs L segment
46
Total deleted nucs L segment
2
Length L segment
12133 (99.8%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
reference
Substitutions
L segment
G
23
T
G
43
C
C
48
T
G
57
T
C
59
T
T
62
C
C
64
T
T
65
G
G
71
T
A
72
T
C
85
T
G
93
A
A
109
G
G
112
A
T
121
C
G
130
T
T
131
A
C
136
T
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Deletions
L segment
12086, 12087
Insertions
L segment
ins_66:CC, ins_11927:GT, ins_12030:TC, ins_12051:TAGTGCAATTCTTTCTAC, ins_12108:TTGATTATTTCTAGGGTGTGGG
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
reference
Substitutions
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
A
122
T
RdRp:
I
157
L
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
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Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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