This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001K1A7.1

Thailand/LOC_001K1A7.1/2024-11-08
P. Sittikul, P. Sriburin, J. Rattanamahaphoom, S. Chatchen & W. Hattasingh

Mahidol University, Department of Tropical Pediatrics, Faculty of Tropical Medicine

Sample details

Collection date
2024-11-08
Earliest release date
2026-10-26
Sampling location
Thailand
Isolate name
BI009F1

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-10-26
NCBI update date
2026-10-26
INSDC accession

Host

Host

Submission details

Submission ID
PZ837824.1
Submitting group
Date submitted
2026-11-04 12:16:29 UTC
Date released
2026-11-04 12:30:00 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
209
Length
891 (12%)

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions
  • T2448G
  • G2452T
  • G2453C
  • A2454C
  • C2472T
  • G2476A
  • C2481G
  • C2483A
  • T2485A
  • C2486A
  • C2487T
  • G2489A
  • A2490G
  • T2493G
  • G2494A
  • G2495A
  • T2496C
  • T2499C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:G3S
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:I179V
Deletions
N/A
Insertions
N/A

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