This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001JAN9.1

Turkey/LOC_001JAN9.1/2022-06-24
Q. Lin, N. Elaldi, M. Yigit, B. Yildiz, R. Hewson, M. Lopez-Garcia, G. Lythe, A. N. Pektas, B. Koksal, T. N. Tasseten, A. Deniz, H. Bedir, Y. Cakir Kiymaz, Z. Vatansever, C. Molina-Paris & T. Leitner

Kafkas University, Department of Parasitology

Sample details

Collection date
2022-06-24
Earliest release date
2026-04-19
Sampling location
Turkey (Sivas, Yildizeli, Cobansaray)
Isolate name
TRKAU/T-122-2/Yildizeli/2022

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-04-19
INSDC accession M segment

Host

Host

Submission details

Submission ID
PX875012.1.M
Submitting group
Date submitted
2026-07-17 10:33:46 UTC
Date released
2026-07-17 10:39:40 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
1028
Total inserted nucs M segment
1
Total deleted nucs M segment
3
Length M segment
5286 (96.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • T63C
  • T64C
  • T67A
  • G72C
  • A76G
  • T78C
  • T79C
  • G80A
  • T81C
  • C88T
  • C92T
  • T96C
  • T98C
  • C99T
  • G103A
  • A104G
  • A108G
  • T109C
Deletions

M segment

326-328
Insertions

M segment

ins_5167:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:H2Y
  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:V9I
  • GPC:F10L
  • GPC:C11Y
  • GPC:C15L
  • GPC:G16C
  • GPC:K19G
  • GPC:T20A
  • GPC:N21H
  • GPC:P23Q
  • GPC:H24L
  • GPC:G26T
  • GPC:N31G
Deletions

GPC

GPC:77
Insertions
N/A

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