This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001HZHY.1

China/LOC_001HZHY.1/2022
Q. Xu

Hangzhou Center for Disease Control and Prevention (Hangzhou Health Supervision Institution), Zhejiang Key Laboratory of Multi-Omics in Infection and Immunity

Sample details

Collection date
2022
Earliest release date
2025-10-12
Sampling location
China
Isolate name
2022CV16-HZ-51

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-10-12
NCBI update date
2025-10-12
INSDC accession

Host

Host

Submission details

Submission ID
PX448826.1
Submitting group
Date submitted
2026-07-27 14:06:59 UTC
Date released
2026-07-27 14:16:33 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
1571
Total inserted nucs
1
Total deleted nucs
10
Total frame shifts
1
Frame shifts
VP3:34-242(nt:1817-2445)
Length
7328 (99%)

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions
  • A67C
  • T69C
  • C71T
  • G89A
  • T90A
  • T94C
  • C96T
  • A105C
  • T107C
  • C110T
  • C118T
  • A119T
  • A124G
  • T127A
  • T129A
  • C135T
  • G137A
  • T138A
Deletions
101-103, 130-132, 702-704, 1816
Insertions
ins_7341:T

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

2A

  • 2A:K2R
  • 2A:S66N
  • 2A:R68K
  • 2A:S77T
  • 2A:V121I

2B

  • 2B:T15M
  • 2B:I47V
  • 2B:I57V
  • 2B:A96V

2C

  • 2C:N23S
  • 2C:I228V
  • 2C:R268K
  • 2C:S271T
  • 2C:V303I
  • 2C:Y318S

3A

  • 3A:P3L
  • 3A:R6K
  • 3A:D39E
  • 3A:T49A
  • 3A:I61V

3B

  • 3B:T10A
  • 3B:I15V

3C

  • 3C:V36I
  • 3C:I56V
  • 3C:I86V
  • 3C:N93T
  • 3C:S95T
  • 3C:A96G
  • 3C:V103I
  • 3C:V157I
  • 3C:S177G

3D

  • 3D:V6M
  • 3D:I17V
  • 3D:N37S
  • 3D:H44T
  • 3D:R46K
  • 3D:D53N
  • 3D:I74V
  • 3D:K75M
  • 3D:E76Q
  • 3D:S93N
  • 3D:Q94K
  • 3D:N106F
  • 3D:T134V
  • 3D:V138T
  • 3D:S139T
  • 3D:L152M
  • 3D:I165L
  • 3D:A190T

VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:N143T
  • VP1:T164K

VP2

  • VP2:I32V
  • VP2:K43P
  • VP2:A45T
  • VP2:I126V
  • VP2:D139T
  • VP2:V149A
  • VP2:N162H
  • VP2:V170I
  • VP2:I215L
  • VP2:A226T
  • VP2:I252V
Deletions

VP3

VP3:33
Insertions
N/A

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