This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
Uganda/LOC_001HG80.1/2025-01-19
S. Nabadda, I. Sewanyana, H. Kyobe Bosa, M. Wayengera, S. K. Tessema, D. Ssemwanga, P. van Heusden, A. Christoffels, G. Mboowa, D. J. Park, H. Onywera, C. K. Tanui, S. W. Mwangi, S. Balinandi, T. Andrew, J. Sseruyange, H. R. Oundo, W. Tenywa, G. T. Wenka, M. Murungi, J. M. Kabahita, V. Nakintu, C. Makoha, A. Ssemaganda, S. Kanyerezi & A. Ayitewala

The Central Public Health Laboratories, Kampala

Sample details

Collection date
2025-01-19
Earliest release date
2025-02-05
Sampling location
Uganda (Kampala)

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-02-05
NCBI update date
2025-02-06
INSDC accession
BioProject accession
BioSample accession

Host

Submission details

Submission ID
OZ222062.1
Date submitted
2026-03-21 21:47:11 UTC
Date released
2026-03-21 21:48:04 UTC

Files


Alignment and QC

Total SNPs
171
Length
18225 (96.6%)
Variant
False

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • A134C
  • A135G
  • A337G
  • C354T
  • T895C
  • A1126C
  • C1321T
  • G1450T
  • C1646T
  • T1885C
  • C1893T
  • A1978G
  • C2247T
  • T2356C
  • G2390A
  • C2452T
  • C2618T
  • T2662A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_002549.1 reference

Substitutions

GP

  • GP:S17N
  • GP:P411L
  • GP:T417M
  • GP:P419L
  • GP:T442A
  • GP:P451S

L

  • L:K43R
  • L:N120S
  • L:I954V
  • L:D1383E
  • L:S1585P
  • L:T1704P
  • L:A1748V
  • L:V1760I
  • L:P1877S
  • L:V1889I

NP

  • NP:T479I
  • NP:S597L
  • NP:G645R
  • NP:L721F

VP30

  • VP30:V71I

VP35

  • VP35:V185I
  • VP35:I190T

VP40

  • VP40:M276I

sGP

  • sGP:S17N

ssGP

  • ssGP:S17N
Deletions
N/A
Insertions
N/A

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