LOC_001HCVV.1

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United_Arab_Emirates/LOC_001HCVV.1/2019-04-28

J. V. Camp, D. Ahmed, B. M. Osman, M. S. Shah, B. Howarth, T. Khafaga, P. Weidinger, N. Karuvantevida, J. Kolodziejek, H. Mazrooei, N. Wolf, T. Loney, N. Nowotny, M. O. Babiker & M. Sher Shah

University of Veterinary Medicine Vienna, Institute of Virology

Sample details

Collection date

2019-04-28

Earliest release date

2020-03-22

Sampling location

United Arab Emirates

Isolate name

CT25M2

Data use terms

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2020-03-22

INSDC accession M segment

MN516487.1

INSDC accession S segment

MN516482.1

Host

hard ticks; hardbacked ticks; scale ticks (Hyalomma dromedarii)

Submission details

Submission ID

MN516487.1.M/MN516482.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-07-17 10:33:46 UTC

Date released

2026-07-17 10:38:04 UTC

Clade & Lineage

Closest reference M segment

M (MH396653.1) (variant)

Closest reference S segment

S1 (OL774851.1) (variant)

Files

Annotations

LOC_001HCVV.1.embl

Alignment and QC

Total SNPs M segment

132

Length M segment

672 (12.3%)

Total SNPs S segment

Length S segment

492 (27.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

M segment

A3619C
A3622T
C3628T
A3631C
C3634T
A3637G
C3646A
C3649T
T3658C
T3667C
T3670C
T3676A
T3688G
A3691T
T3697A
C3703T
T3715G
T3716C

S segment

C150T
T165C
G168A
C171A
A173G
G174A
G180A
C192T
T195C
C201T
A213G
G231A
G276A
G282A
T287C
T288C
G312A
G330A

Deletions

N/A

Insertions

N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references