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LOC_001HADW.1
Download
Download FASTA
Download metadata TSV
Kenya/LOC_001HADW.1/2024
J. B. Richardson
United States Army Medical Research Institute of Infectious Diseases, Center for Genome Science
Sample details
Collection date
2024
Earliest release date
2026-03-18
Sampling location
Kenya
Isolate name
T352
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-21 21:26
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2026-03-18
INSDC accession L
PX753792.1
INSDC accession M
PX753793.1
INSDC accession S
PX753794.1
Submission details
Submission ID
PX753792.1.L/PX753793.1.M/PX753794.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-21 21:26:50 UTC
Date released
2026-03-21 21:36:53 UTC
Host
Host
Hyalomma marginatum
Lineage
Segment S Lineage
III
Files
Annotations
LOC_001HADW.1.embl
Alignment and QC
Total SNPs S
107
Total inserted nucs S
1
Length S
1384 (82.7%)
Variant S
False
Total SNPs M
282
Total deleted nucs M
1
Length M
5346 (99.6%)
Variant M
True
Total SNPs L
832
Total unknown nucs L
36
Length L
11741 (96.7%)
Variant L
True
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
34
C
T
49
C
C
63
G
C
64
T
T
65
C
T
70
C
G
93
A
T
106
C
A
124
G
T
157
C
T
160
C
T
163
C
T
202
C
T
229
C
A
238
T
T
254
A
A
262
G
A
268
G
Show more
M
C
82
T
G
84
A
C
85
T
T
86
C
A
87
G
A
88
G
A
117
G
A
146
G
A
163
G
A
174
G
A
192
G
C
193
T
C
194
T
A
195
G
A
203
G
C
205
T
C
217
T
T
222
C
Show more
S
C
295
T
A
298
G
A
322
G
A
325
G
A
327
G
G
346
A
A
358
C
C
370
T
G
397
A
C
400
T
G
418
A
G
421
A
A
425
G
G
428
A
G
429
A
G
451
A
A
460
G
C
484
A
Show more
Deletions
M
5172
Insertions
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
9
V
GPC:
H
24
R
GPC:
R
28
G
GPC:
T
34
V
GPC:
M
35
V
GPC:
P
38
L
GPC:
P
42
L
GPC:
S
44
P
GPC:
P
46
H
GPC:
A
51
V
GPC:
S
53
P
GPC:
L
56
P
GPC:
P
58
L
GPC:
P
80
S
GPC:
G
85
E
GPC:
S
86
G
GPC:
P
88
S
GPC:
S
90
P
Show more
NP
NP:
K
91
R
NP:
T
124
A
NP:
G
125
N
NP:
L
179
Q
NP:
H
195
R
NP:
I
246
V
NP:
S
301
G
NP:
K
428
R
NP:
V
436
I
NP:
I
482
V
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
N
206
H
RdRp:
V
352
I
RdRp:
I
505
T
RdRp:
A
508
V
RdRp:
S
596
G
RdRp:
N
647
S
RdRp:
T
757
A
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
P
774
L
RdRp:
G
778
D
RdRp:
N
779
S
RdRp:
Q
780
K
RdRp:
I
783
T
RdRp:
E
785
D
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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