This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001HAB0.1

Cameroon/LOC_001HAB0.1/2023-11-06
A. Namekong Fokeng, A. Paguem, M. Gasparine, K. Tanyi Manchang, F. Fewou Mfoujouem, S. Mvodo, R. Charrel, X. De Lamballerie & A. Falchi

Unite des Virus Emergents, Universite de Corse, Sciences et Techniques

Sample details

Collection date
2023-11-06
Earliest release date
2025-12-28
Sampling location
Cameroon
Isolate name
11-2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:26insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-12-28
INSDC accession M

Submission details

Submission ID
PX659870.1.M
Submitting group
Date submitted
2026-03-21 21:26:50 UTC
Date released
2026-03-21 21:36:53 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs M
387
Total inserted nucs M
48
Total deleted nucs M
2263
Total frame shifts M
3
Frame shifts M
GPC:468-1033(nt:1493-3191),GPC:1092-1416(nt:3366-4340),GPC:1621-1685(nt:4953-5147)
Length M
1459 (68.5%)
Stop codons M
GPC:43
Total stop codons M
1
Variant M
True

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • T1380A
  • T1382A
  • G1386T
  • T1387A
  • T1390A
  • A1391C
  • T1393C
  • C1394A
  • A1395C
  • A1396C
  • A1397C
  • T1398A
  • C1399G
  • A1400T
  • C1401G
  • G1404A
  • T1405A
  • T1409A
Deletions

M

1482-1492, 1660-1665, 1838, 1862-3151, 3192, 3365, 3396, 3674-4077, 4406-4952, 4992
Insertions

M

ins_1553:CCTCTGCCGGGACACTACAGCTCTCCTGCTAGACCGGCACACAAC, ins_1733:G, ins_4340:G, ins_5035:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:D33N
  • GPC:T34R
  • GPC:M35H
  • GPC:T36Y
  • GPC:T37D
  • GPC:P38T
  • GPC:G39P
  • GPC:D40S
  • GPC:N41D
  • GPC:P42N
  • GPC:S43*
  • GPC:S44A
  • GPC:E45P
  • GPC:P46N
  • GPC:P47S
  • GPC:V48Q
  • GPC:S49L
  • GPC:T50H
Deletions

GPC

GPC:218-467, GPC:1034, GPC:1439-1620
Insertions
N/A

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