This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001HA3G.1

Guinea/LOC_001HA3G.1/2024-12-13
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, M. Y. Kartashov, A. V. Shipovalov, A. B. Ibrahim, E. A. Basov, A. P. Smolina, N. P. Guseva, T. A. Polunina, N. V. Kotova, S. D. Katyshev, S. Boumbaly & M. S. Traore

Russian Antiplague Research Institute 'Microbe', Microbiology

Sample details

Collection date
2024-12-13
Earliest release date
2025-08-09
Sampling location
Guinea
Isolate name
751

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:26insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-09
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
PV987609.1.L/PV987601.1.M/PV987593.1.S
Submitting group
Date submitted
2026-03-21 21:26:50 UTC
Date released
2026-03-21 21:36:53 UTC

Host

Host

Lineage

Segment S Lineage
V

Files

Annotations

Alignment and QC

Total SNPs L
500
Total inserted nucs L
3
Total unknown nucs L
1487
Length L
11970 (86.6%)
Variant L
True
Total SNPs S
185
Total deleted nucs S
2
Total unknown nucs S
138
Length S
1650 (90.6%)
Variant S
True
Total SNPs M
310
Total unknown nucs M
841
Length M
2912 (38.6%)
Variant M
True

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G93A
  • A113G
  • G116A
  • G175A
  • G190A
  • C193T
  • C205T
  • G217A
  • C223T
  • A231G
  • C244T
  • T250C
  • T253C
  • T254A
  • G301A
  • C313T
  • G328A
  • C332T

M

  • A1577T
  • T1586A
  • T1587C
  • G1589A
  • G1592A
  • G1595A
  • G1604A
  • A1607G
  • A1628C
  • A1629C
  • C1631T
  • C1634T
  • T1637C
  • T1644C
  • T1649G
  • A1652C
  • A1655G
  • A1658G

S

  • G20T
  • G54A
  • A118G
  • G123A
  • G134A
  • G136A
  • C142T
  • T155C
  • C166T
  • T175C
  • C178A
  • T182C
  • G189A
  • G190A
  • C208T
  • C235T
  • C244T
  • T250A
Deletions

S

1574, 1575
Insertions

L

ins_6460:AAA

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:T513P
  • GPC:P523S
  • GPC:S524D
  • GPC:D525G
  • GPC:I541V
  • GPC:G543N
  • GPC:V578I
  • GPC:R579K
  • GPC:T589S
  • GPC:G590E
  • GPC:K591R
  • GPC:N592P
  • GPC:V598T
  • GPC:K601E
  • GPC:Y606F
  • GPC:R609K
  • GPC:V626I
  • GPC:T633S

NP

  • NP:G23E
  • NP:V27I
  • NP:Y34H
  • NP:R45K
  • NP:S109N
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:I246V
  • NP:R270K
  • NP:S301G
  • NP:V436I

RdRp

  • RdRp:S6N
  • RdRp:I13V
  • RdRp:A14T
  • RdRp:N52S
  • RdRp:Y60N
  • RdRp:N206Y
  • RdRp:C422Y
  • RdRp:V444I
  • RdRp:S498N
  • RdRp:S504C
  • RdRp:I505T
  • RdRp:V515I
  • RdRp:C648S
  • RdRp:K673R
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:P774L
Deletions
N/A
Insertions

RdRp

ins_RdRp:2129:E

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