This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001H9NC.1

China/LOC_001H9NC.1/2024
Q. Xu

Hangzhou Center for Disease Control and Prevention (Hangzhou Health Supervision Institution), Zhejiang Key Laboratory of Multi-Omics in Infection and Immunity

Sample details

Collection date
2024
Earliest release date
2025-10-12
Sampling location
China
Isolate name
2024CV16-HZ-217

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-27 16:02insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-10-12
NCBI update date
2025-10-12
INSDC accession

Host

Host

Submission details

Submission ID
PX448984.1
Submitting group
Date submitted
2026-02-27 16:01:59 UTC
Date released
2026-02-27 16:17:03 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
1614
Total inserted nucs
15
Total deleted nucs
23
Length
7359 (99.4%)
Variant
False

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T41G
  • C47T
  • T54A
  • A58G
  • T60G
  • C61T
  • T62C
  • A67C
  • T69C
  • C71T
  • G89T
  • C91T
  • T94C
  • A105C
  • C110T
  • C118T
  • A119T
  • A124G
Deletions

101-103, 130-132, 716-724, 7331-7338
Insertions

ins_693:GTCACG, ins_7345:AGCTTGAAG

Amino acid mutations

Mutations called relative to the U05876.1 reference

Substitutions

2A

  • 2A:K2R
  • 2A:S66N
  • 2A:R68K
  • 2A:S77T
  • 2A:H104Y
  • 2A:V121I

2B

  • 2B:T15M
  • 2B:I47V
  • 2B:I57V
  • 2B:I93V
  • 2B:A96V

2C

  • 2C:N23S
  • 2C:I228V
  • 2C:G264S
  • 2C:R268K
  • 2C:S271T
  • 2C:V303I
  • 2C:Y318S

3A

  • 3A:P3L
  • 3A:R6K
  • 3A:D39E
  • 3A:T49A
  • 3A:I61V

3B

  • 3B:T10A
  • 3B:I15V

3C

  • 3C:V36I
  • 3C:I56V
  • 3C:N93T
  • 3C:S95T
  • 3C:A96G
  • 3C:V103I
  • 3C:V157I
  • 3C:S177G

3D

  • 3D:I17V
  • 3D:D32G
  • 3D:N37S
  • 3D:H44T
  • 3D:R46K
  • 3D:I74V
  • 3D:K75T
  • 3D:E76Q
  • 3D:S93N
  • 3D:Q94K
  • 3D:N106F
  • 3D:T134V
  • 3D:V138I
  • 3D:S139T
  • 3D:L152M
  • 3D:I165L
  • 3D:A190T
  • 3D:I205V

VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61R
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:T164K

VP2

  • VP2:I18V
  • VP2:I32V
  • VP2:I33V
  • VP2:A34G
  • VP2:E40N
  • VP2:K43P
  • VP2:A45T
  • VP2:F64Y
  • VP2:D67S
  • VP2:A72T
  • VP2:K73Q
  • VP2:D74N
  • VP2:T87N
  • VP2:E88D
  • VP2:F98Y
  • VP2:I126V
  • VP2:D139T
  • VP2:V149A

VP3

  • VP3:A33P
  • VP3:R41H
  • VP3:Q59K
  • VP3:S60T
  • VP3:V85A
  • VP3:N93D
  • VP3:G141S
  • VP3:L147I
  • VP3:I169V
  • VP3:K182R
  • VP3:D183A
  • VP3:T193I
  • VP3:S238T

VP4

  • VP4:S3A
  • VP4:N15T
  • VP4:N17T
  • VP4:S18V
  • VP4:S20R
  • VP4:Y27F
  • VP4:T29N
  • VP4:A36S
  • VP4:A41G
  • VP4:G42S
  • VP4:R43K
  • VP4:M46Y
  • VP4:K51S
  • VP4:D55Q
  • VP4:I61L
  • VP4:H62K
  • VP4:K69Q
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue