This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_001H9ME.1
Download
Download FASTA
Download metadata TSV
France/LOC_001H9ME.1/2024
M. Gasparine &
A. Falchi
University of Corsica, Unite des Virus Emergents
Sample details
Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
3154
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-21 21:26
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-08-10
INSDC accession L
PV976879.1
INSDC accession M
PV976878.1
INSDC accession S
PV976895.1
Submission details
Submission ID
PV976879.1.L/PV976878.1.M/PV976895.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-21 21:26:50 UTC
Date released
2026-03-21 21:36:53 UTC
Host
Host
Ixodoidea
Lineage
Segment S Lineage
III
Files
Annotations
LOC_001H9ME.1.embl
Alignment and QC
Total SNPs L
290
Total inserted nucs L
52
Length L
12157 (100%)
Variant L
True
Total SNPs S
131
Total inserted nucs S
1
Length S
1673 (100%)
Variant S
False
Total SNPs M
167
Length M
5366 (100%)
Variant M
True
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
C
64
T
T
65
C
T
70
C
G
93
A
C
100
T
T
151
C
T
160
C
T
254
A
A
298
G
C
313
T
T
340
C
C
427
T
T
550
G
G
553
A
A
563
G
C
568
T
G
619
A
A
677
G
Show more
M
C
82
T
G
124
A
T
137
C
G
175
T
G
207
A
C
217
T
C
229
A
T
259
C
C
320
T
C
356
T
T
360
C
A
364
G
A
377
G
T
385
C
C
404
T
T
406
C
C
410
T
G
414
A
Show more
S
G
47
C
A
50
G
G
54
A
G
67
A
G
99
A
G
100
A
C
178
G
T
181
C
C
187
T
G
189
A
T
199
C
G
202
A
T
220
C
G
229
A
C
235
T
A
247
G
G
271
A
T
274
C
Show more
Deletions
N/A
Insertions
L
ins_12097:CTCATTTCAGCTTCATCGTCATCGTTATTATTTTGGGGTGTGGGGGGAACGA
S
ins_1581:T
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
C
11
Y
GPC:
R
28
I
GPC:
G
39
S
GPC:
P
42
L
GPC:
P
46
Q
GPC:
L
56
P
GPC:
S
90
P
GPC:
E
91
G
GPC:
V
98
A
GPC:
L
105
S
GPC:
G
108
S
GPC:
P
112
T
GPC:
S
113
G
GPC:
G
119
D
GPC:
A
122
T
GPC:
P
123
L
GPC:
N
131
S
GPC:
V
146
M
Show more
NP
NP:
R
15
K
NP:
R
45
K
NP:
K
91
R
NP:
T
124
A
NP:
G
125
N
NP:
L
179
Q
NP:
H
195
R
NP:
I
246
V
NP:
R
270
G
NP:
S
301
G
NP:
K
428
R
NP:
T
429
I
NP:
V
436
I
NP:
S
451
P
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
T
163
A
RdRp:
S
201
G
RdRp:
I
505
T
RdRp:
T
767
A
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
A
1038
T
RdRp:
G
1047
E
RdRp:
R
1126
H
RdRp:
T
1182
I
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
V
1496
I
RdRp:
M
1647
L
RdRp:
P
1660
T
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
Report an issue with this sequence or metadata
Create GitHub issue