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LOC_001H987.1
Download
Download FASTA
Download metadata TSV
Turkey/LOC_001H987.1/2020-08-10
J. D'Addiego,
S. Shah,
N. Elaldi,
D. Allen &
R. Hewson
UK Health Security Agency, Research & Evaluation
Sample details
Collection date
2020-08-10
Earliest release date
2024-10-26
Sampling location
Turkey
Isolate name
CCHFV_18
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-05 16:08
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-10-26
INSDC accession L
PP735360.1
INSDC accession M
PP735359.1
INSDC accession S
PP735358.1
Submission details
Submission ID
PP735360.1.L/PP735359.1.M/PP735358.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-05 16:08:33 UTC
Date released
2026-03-05 16:12:45 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_001H987.1.embl
Alignment and QC
Total SNPs L
507
Total ambiguous nucs L
58
Length L
5062 (41.3%)
Variant L
False
Total SNPs M
489
Total ambiguous nucs M
46
Length M
3055 (55.1%)
Variant M
False
Total SNPs S
216
Total ambiguous nucs S
3
Length S
1498 (82.8%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
T
254
A
A
262
G
G
264
A
C
265
T
A
268
G
C
276
T
A
310
G
C
313
T
G
315
A
A
316
G
G
328
A
C
331
T
C
332
T
C
346
T
A
376
G
A
385
T
A
388
G
T
394
C
Show more
M segment
A
1269
G
C
1270
T
A
1273
G
G
1276
A
T
1285
C
C
1288
T
C
1306
A
T
1312
C
T
1321
C
G
1327
A
A
1333
G
C
1348
T
G
1355
A
T
1378
C
C
1381
T
A
1382
G
C
1386
T
A
1387
G
Show more
S segment
T
63
C
A
65
G
A
69
G
A
93
G
A
98
T
C
99
T
A
105
G
G
118
A
C
126
T
T
141
C
C
150
T
G
155
A
T
159
A
T
166
C
C
171
T
A
186
G
T
195
C
C
201
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
N
394
S
GPC:
V
423
I
GPC:
I
432
V
GPC:
A
433
V
GPC:
I
438
V
GPC:
A
448
P
GPC:
I
449
V
GPC:
Q
453
H
GPC:
H
455
Y
GPC:
S
473
N
GPC:
F
482
V
GPC:
R
507
K
GPC:
R
510
K
GPC:
R
517
K
GPC:
S
523
P
GPC:
V
541
I
GPC:
G
543
D
GPC:
V
561
I
Show more
NP
NP:
N
9
S
NP:
Y
20
F
NP:
V
27
M
NP:
S
39
N
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
Q
179
L
NP:
D
199
E
NP:
K
265
R
NP:
R
270
K
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
N
419
S
NP:
R
428
K
RdRp
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
G
449
D
RdRp:
N
453
S
RdRp:
I
505
T
RdRp:
N
507
S
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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