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LOC_001H8MF.1
Download
Download FASTA
Download metadata TSV
Tajikistan/LOC_001H8MF.1/2023-05-26
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
UK Health Security Agency, Research & Evaluation
Sample details
Collection date
2023-05-26
Earliest release date
2025-04-05
Sampling location
Tajikistan
Isolate name
CCHFV_6_161
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-21 21:26
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-04-05
INSDC accession L
PV390627.1
INSDC accession S
PV390610.1
Submission details
Submission ID
PV390627.1.L/PV390610.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-21 21:26:50 UTC
Date released
2026-03-21 21:35:52 UTC
Host
Host
Hyalomma anatolicum
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_001H8MF.1.embl
Alignment and QC
Total SNPs L
1606
Total inserted nucs L
47
Total deleted nucs L
1
Total ambiguous nucs L
36
Length L
12131 (99.5%)
Variant L
True
Total SNPs S
214
Total inserted nucs S
1
Total ambiguous nucs S
12
Length S
1673 (99.3%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
A
35
G
G
43
C
C
48
T
C
59
T
C
64
T
T
65
G
G
71
T
A
72
T
C
85
T
G
88
A
G
93
A
A
109
G
G
112
A
T
121
C
G
130
T
T
131
A
C
136
T
T
151
C
Show more
S
C
25
T
G
54
A
A
61
G
C
64
T
G
67
A
T
79
C
G
99
A
A
118
G
C
142
T
T
157
C
C
166
T
C
178
A
T
182
C
C
187
T
G
190
A
G
196
A
C
214
T
C
217
T
Show more
Deletions
L
11996
Insertions
L
ins_66:CC, ins_11927:GT, ins_12045:CTATTTTAGTGCAATTCTTTCTACCATTAGT, ins_12108:GTGKGGGGAGAA
S
ins_1579:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
V
RdRp:
M
112
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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