This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001H8DY.1

Tajikistan/LOC_001H8DY.1/2023-05-23
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

UK Health Security Agency, Research & Evaluation

Sample details

Collection date
2023-05-23
Earliest release date
2025-04-05
Sampling location
Tajikistan
Isolate name
CCHFV_14_169

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:26insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-04-05
INSDC accession S

Submission details

Submission ID
PV390612.1.S
Submitting group
Date submitted
2026-03-21 21:26:50 UTC
Date released
2026-03-21 21:35:52 UTC

Host

Host

Lineage

Segment S Lineage
IV.2

Files

Annotations

Alignment and QC

Total SNPs S
177
Total inserted nucs S
1
Total ambiguous nucs S
9
Length S
1254 (74.4%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • A425G
  • G428T
  • G429A
  • A439G
  • C445T
  • T446C
  • A460G
  • C478T
  • C484A
  • C487T
  • A490G
  • T496C
  • C497T
  • G499A
  • A503C
  • C505T
  • C514T
  • G538A
Deletions
N/A
Insertions

S

ins_1579:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:T124A
  • NP:G125Y
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K263R
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I
Deletions
N/A
Insertions
N/A

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