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LOC_001H8A4.1
Download
Download FASTA
Download metadata TSV
Turkey/LOC_001H8A4.1/2023-04-28
M. A. Kuskucu,
D. Yapar,
S. Yalcin,
A. Celikbas,
N. Baykam,
F. Can &
O. Ergonul
Koc University, Medical Microbiology, KUISCID
Sample details
Collection date
2023-04-28
Earliest release date
2025-04-01
Sampling location
Turkey
Isolate name
VK4_KUISCID
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-21 21:26
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-04-01
INSDC accession L
PV330319.1
INSDC accession M
PV330318.1
INSDC accession S
PV330317.1
Submission details
Submission ID
PV330319.1.L/PV330318.1.M/PV330317.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-21 21:26:50 UTC
Date released
2026-03-21 21:35:52 UTC
Host
Host
Homo sapiens
Lineage
Segment S Lineage
V
Files
Annotations
LOC_001H8A4.1.embl
Alignment and QC
Total SNPs M
1043
Total inserted nucs M
1
Total deleted nucs M
3
Total ambiguous nucs M
3
Length M
5357 (99.8%)
Variant M
True
Total SNPs S
248
Total inserted nucs S
1
Total deleted nucs S
5
Total ambiguous nucs S
1
Length S
1648 (98.7%)
Variant S
False
Total SNPs L
1325
Total inserted nucs L
2
Total ambiguous nucs L
7
Length L
12070 (99.6%)
Variant L
True
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
A
42
T
G
43
C
T
49
C
A
53
G
T
58
C
C
59
T
C
63
T
C
64
G
T
66
C
A
72
G
A
73
C
A
91
G
G
93
A
C
100
T
A
109
G
T
131
A
C
133
T
T
139
C
Show more
M
T
40
A
G
50
A
A
51
G
T
67
C
A
69
G
T
71
A
G
76
C
A
80
G
T
83
C
G
84
A
T
86
C
C
92
T
T
100
C
T
102
C
C
103
T
A
108
G
T
113
C
G
114
T
Show more
S
T
49
C
A
50
T
G
54
A
T
79
C
A
81
G
G
99
A
G
100
A
A
109
G
C
115
T
G
134
A
C
142
T
T
157
C
C
166
T
G
171
A
T
175
A
C
178
A
T
182
C
C
187
T
Show more
Deletions
M
321-323
S
1614-1618
Insertions
L
ins_67:C, ins_11924:G
M
ins_5171:T
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
G
16
C
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
L
GPC:
E
26
T
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
T
34
N
GPC:
M
35
T
GPC:
T
37
A
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
L
343
M
RdRp:
V
352
I
RdRp:
N
453
S
Show more
Deletions
GPC
GPC:77
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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