This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001H4C4.1

Ghana/LOC_001H4C4.1/2020-02-13
S. O. Addo, R. E. Bentil, B. O. A. Baako, K. N. Yartey, J. Ansah-Owusu, C. N. L. Tawiah-Mensah, B. Agbodzi, S. Kumordjie, C. Yeboah, V. Asoala, J. C. Dunford, J. A. Larbi, P. K. Baidoo, M. D. Wilson, J. W. II Diclaro & S. K. Dadzie

University of Ghana Noguchi Memorial Institute for Medical Research, NAMRU-3

Sample details

Collection date
2020-02-13
Earliest release date
2023-06-18
Sampling location
Ghana (Navrongo)
Isolate name
TK-12/Ghana/2020

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-05 16:08insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-06-18
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
OQ441062.1.L/OQ441061.1.M/OQ441060.1.S
Submitting group
Date submitted
2026-03-05 16:08:33 UTC
Date released
2026-03-05 16:12:45 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs L
311
Total inserted nucs L
35
Length L
12134 (99.9%)
Variant L
False
Total SNPs M
1218
Total deleted nucs M
38
Length M
5340 (99.6%)
Variant M
False
Total SNPs S
32
Length S
1635 (90.5%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

Substitutions

L segment

  • T10C
  • T65C
  • T70C
  • G93A
  • T254A
  • G277A
  • A298G
  • G304A
  • C313T
  • G315A
  • G330A
  • T340C
  • T550G
  • G553A
  • C568T
  • G619A
  • C673T
  • T707C

M segment

  • G22C
  • C23G
  • G24T
  • G26A
  • T27G
  • C28T
  • G29A
  • G32T
  • C33A
  • G34A
  • T35G
  • G36T
  • G38T
  • A39T
  • T42C
  • G43T
  • G45T
  • C47A

S segment

  • T16A
  • C22T
  • G34T
  • A98T
  • G282A
  • A301G
  • A311G
  • G330A
  • G339A
  • G564A
  • G627A
  • A720G
  • G765A
  • A768G
  • C783T
  • T912C
  • C1035T
  • T1062C
Deletions

M segment

5213-5217, 5245, 5276-5307
Insertions

L segment

ins_12108:TTCATTGTCATCGTTATTATCTTGGGGTGTGGGGG

Amino acid mutations

Mutations called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

Substitutions

GPC

  • GPC:L2F
  • GPC:F3L
  • GPC:E6K
  • GPC:H7F
  • GPC:I11T
  • GPC:V14F
  • GPC:I18L
  • GPC:S21G
  • GPC:L25V
  • GPC:D27S
  • GPC:E28G
  • GPC:A29G
  • GPC:R30G
  • GPC:S33T
  • GPC:M35S
  • GPC:G38T
  • GPC:A39T
  • GPC:T40L

NP

  • NP:Y20F
  • NP:I88V
  • NP:K91R

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:R80K
  • RdRp:S85N
  • RdRp:N448S
  • RdRp:S498N
  • RdRp:I505T
  • RdRp:V584M
  • RdRp:T767A
  • RdRp:G778D
  • RdRp:S789A
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:A1038T
  • RdRp:G1047E
  • RdRp:H1161N
  • RdRp:T1182I
Deletions
N/A
Insertions
N/A

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