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LOC_001H32R.1
Download
Download FASTA
Download metadata TSV
Pakistan/LOC_001H32R.1/2023-08-30
M. Umair,
S. A. Haider,
Z. Jamal,
M. Ammar,
R. Hakim,
Q. Ali &
M. Salman
National Institute of Health, Department of Virology
Sample details
Collection date
2023-08-30
Earliest release date
2023-12-26
Sampling location
Pakistan
Isolate name
CCHF/NIHPAK-21/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-21 21:26
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-12-26
INSDC accession L
OR964927.1
INSDC accession M
OR964938.1
INSDC accession S
OR964916.1
Submission details
Submission ID
OR964927.1.L/OR964938.1.M/OR964916.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-21 21:26:50 UTC
Date released
2026-03-21 21:34:49 UTC
Host
Host
Homo sapiens
Lineage
Segment S Lineage
IV.1
Files
Annotations
LOC_001H32R.1.embl
Alignment and QC
Total SNPs L
1220
Total inserted nucs L
49
Total deleted nucs L
1
Total unknown nucs L
814
Length L
12146 (93.2%)
Variant L
False
Total SNPs S
169
Total inserted nucs S
1
Total unknown nucs S
96
Length S
1648 (92.8%)
Variant S
False
Total SNPs M
584
Total inserted nucs M
13
Total unknown nucs M
158
Total frame shifts M
1
Frame shifts M
GPC:420-1685(nt:1349-5147)
Length M
5364 (96.8%)
Variant M
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
G
71
T
G
88
A
G
93
A
A
109
G
A
124
G
T
131
A
T
139
C
T
154
C
T
160
C
C
208
T
T
250
C
Show more
M
C
82
T
C
85
T
T
86
C
A
107
G
A
117
G
C
119
T
C
120
T
T
122
C
C
126
T
A
128
G
T
137
C
G
143
A
A
146
G
G
147
A
A
169
G
A
170
G
G
175
A
A
185
T
Show more
S
A
50
G
G
54
A
G
67
A
T
79
C
G
99
A
A
109
G
A
118
G
C
166
T
G
169
A
T
172
C
C
178
A
T
182
C
G
190
A
T
199
C
C
208
T
C
217
T
G
229
A
C
235
T
Show more
Deletions
L
12034
Insertions
L
ins_58:T, ins_11925:GT, ins_12055:ACAATTTC, ins_12083:ACTATTC, ins_12108:TTTATTATTTCTGGGGTGTGGGGGGAACGAT
M
ins_1348:A, ins_5219:C, ins_5366:TAAATCTTGAC
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
9
V
GPC:
L
10
F
GPC:
E
26
G
GPC:
K
31
N
GPC:
D
33
H
GPC:
T
34
V
GPC:
G
39
D
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
P
GPC:
S
53
P
GPC:
I
54
V
GPC:
L
56
P
GPC:
P
80
S
GPC:
G
85
K
GPC:
S
86
G
GPC:
P
88
S
GPC:
S
90
P
Show more
NP
NP:
R
15
K
NP:
V
83
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
I
246
V
NP:
S
301
G
NP:
A
307
V
NP:
Q
405
L
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
I
505
T
RdRp:
A
508
V
RdRp:
G
762
E
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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