This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001H1PJ.1

Kosovo/LOC_001H1PJ.1/2013-07-01
L. Fajs, X. Jakupi, S. Ahmeti, I. Humolli, I. Dedushaj & T. Avsic-Zupanc

University of Ljubljana, Faculty of Medicine, Institute of Microbiology and Immunology

Sample details

Collection date
2013-07-01
Earliest release date
2014-03-12
Sampling location
Kosovo
Isolate name
KS_216

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2014-03-12
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
KF595144.1.M/KF595133.1.S
Submitting group
Date submitted
2026-10-05 18:33:09 UTC
Date released
2026-10-05 18:33:59 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
77
Length M segment
421 (7.71%)
Total SNPs S segment
148
Length S segment
1109 (61.4%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

M segment

  • C4639T
  • C4640T
  • C4648T
  • A4660G
  • G4662A
  • T4672C
  • A4685G
  • A4690T
  • C4697A
  • A4709G
  • G4714A
  • C4720T
  • A4723G
  • A4726G
  • T4738A
  • T4739C
  • G4741A
  • C4744T

S segment

  • C201T
  • A213G
  • T219C
  • C228T
  • G231A
  • T234G
  • G246A
  • A252C
  • A255G
  • T258C
  • T267C
  • G276A
  • G282T
  • T288C
  • C294T
  • A309G
  • A315G
  • A321G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:R1525K
  • GPC:K1533E
  • GPC:E1534D
  • GPC:Q1537K
  • GPC:N1541D
  • GPC:K1555R
  • GPC:N1564D
  • GPC:G1590S
  • GPC:I1591V
  • GPC:V1595F
  • GPC:F1600L
  • GPC:T1601L
  • GPC:T1604A
  • GPC:I1607V
  • GPC:I1610V
  • GPC:R1618K
  • GPC:K1648R

NP

  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:Q179L
  • NP:D199E
  • NP:K265R
  • NP:R270K
  • NP:A307P
  • NP:Y311F
  • NP:N419S
Deletions
N/A
Insertions
N/A

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