This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001H1GZ.1

Russia/LOC_001H1GZ.1/2011
A. S. Volynkina & A. N. Kulichenko

Stavropol Research Anti-Plague Institute, Laboratory of Virology

Sample details

Collection date
2011
Earliest release date
2013-11-18
Sampling location
Russia (Astrakhan region)
Isolate name
Astrakhan-5185

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2013-11-18
INSDC accession M segment

Host

Host

Submission details

Submission ID
KF496921.1.M
Submitting group
Date submitted
2026-10-05 18:33:09 UTC
Date released
2026-10-05 18:33:59 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
72
Length M segment
435 (7.97%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • C4640T
  • C4648T
  • A4660G
  • G4662A
  • T4672C
  • A4685G
  • A4690G
  • T4693C
  • A4709G
  • G4714A
  • C4720T
  • A4723G
  • A4726G
  • G4732A
  • T4738A
  • T4739C
  • G4741A
  • C4744T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:R1525K
  • GPC:K1533E
  • GPC:N1541D
  • GPC:N1564D
  • GPC:G1590S
  • GPC:I1591V
  • GPC:V1595F
  • GPC:F1600L
  • GPC:T1601L
  • GPC:I1607V
  • GPC:I1610V
  • GPC:R1618K
  • GPC:F1633L
  • GPC:K1648R
Deletions
N/A
Insertions
N/A

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