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LOC_001H12T.1
Download
Download FASTA
Download metadata TSV
Display Name: Armenia/LOC_001H12T.1/2022
A. Zhirova,
Y. Lisitskaya,
A. Volynkina,
A. Manucharyan &
G. Melik-Andreasyan
Sample details
Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Earliest release date
2025-03-02
Collection country
Armenia
Isolate name
372-ARM-TI-2022
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-13 18:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections
INSDC
NCBI release date
2025-03-02
INSDC accession L
PQ878922.1
INSDC accession M
PQ878913.1
Host
Host taxon id
297308
Host name scientific
Ixodoidea
Alignment and QC metrics L
Length L
437
Total SNPs L
38
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
3.61%
Total stop codons L
0
Alignment and QC metrics M
Length M
435
Total SNPs M
78
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
7.97%
Total stop codons M
0
Submission details
Submission ID
PQ878922.1.L/PQ878913.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-13 18:06:39 UTC
Date released
2026-02-13 18:11:05 UTC
Files
Annotations
LOC_001H12T.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
MH396653.1
references
Substitutions
L
L:
A
124
G
L:
T
131
A
L:
C
148
T
L:
T
151
C
L:
T
154
C
L:
T
160
C
L:
T
163
C
L:
T
202
C
L:
T
229
C
L:
A
240
C
L:
T
254
A
L:
G
264
A
L:
C
265
T
L:
A
268
G
L:
C
276
T
L:
A
310
G
L:
C
313
T
L:
G
315
A
Show more
M
M:
C
4640
T
M:
T
4645
C
M:
C
4648
T
M:
A
4660
G
M:
T
4672
C
M:
C
4678
T
M:
A
4685
G
M:
A
4690
T
M:
T
4693
C
M:
A
4709
G
M:
G
4714
A
M:
C
4720
T
M:
A
4723
G
M:
A
4726
G
M:
G
4732
A
M:
T
4738
A
M:
T
4739
C
M:
G
4741
A
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
&
MH396653.1
references
Substitutions
GPC
GPC:
K
1533
E
GPC:
E
1534
D
GPC:
N
1541
D
GPC:
N
1564
D
GPC:
K
1569
R
GPC:
N
1586
D
GPC:
G
1590
S
GPC:
I
1591
V
GPC:
V
1595
F
GPC:
F
1600
L
GPC:
T
1601
L
GPC:
T
1604
A
GPC:
I
1607
V
GPC:
I
1610
V
GPC:
R
1618
K
GPC:
K
1648
R
RdRp
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
L (aligned)
M (aligned)
Aligned amino acid sequences
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