This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001H0X3.1

Display Name: Armenia/LOC_001H0X3.1/2023
A. Zhirova, Y. Lisitskaya & A. Volynkina

Sample details

Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Earliest release date
2025-03-02
Collection country
Armenia
Isolate name
521-ARM-TI-2023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-13 18:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections

INSDC

NCBI release date
2025-03-02
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics S

Length S
538
Total SNPs S
82
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
29.79%
Total stop codons S
0

Submission details

Submission ID
PQ878908.1.S
Submitting group
Date submitted
2026-02-13 18:06:39 UTC
Date released
2026-02-13 18:11:05 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S

  • S:C99T
  • S:A105G
  • S:A108G
  • S:G118A
  • S:C126T
  • S:T141C
  • S:C150T
  • S:G155A
  • S:T159A
  • S:T166C
  • S:C171T
  • S:A186G
  • S:T195C
  • S:C201T
  • S:A213G
  • S:T219C
  • S:C228T
  • S:G231A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3 & OL774851.1 references

    Substitutions

    NP

  • NP:V27M
  • NP:S39N
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:Q179L
  • NP:D199E
    • Deletions
    None
    Insertions
    None

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