This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001H0SD.1

Display Name: Armenia/LOC_001H0SD.1/2022
A. Zhirova, Y. Lisitskaya & A. Volynkina

Sample details

Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Earliest release date
2025-03-02
Collection country
Armenia
Isolate name
371-ARM-TI-2022

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-13 18:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections

INSDC

NCBI release date
2025-03-02
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics S

Length S
538
Total SNPs S
97
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
29.79%
Total stop codons S
0

Submission details

Submission ID
PQ878903.1.S
Submitting group
Date submitted
2026-02-13 18:06:39 UTC
Date released
2026-02-13 18:11:05 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S

  • S:C99T
  • S:A102G
  • S:A105G
  • S:G107C
  • S:T111C
  • S:A114G
  • S:T117C
  • S:C129T
  • S:C138T
  • S:T147C
  • S:G153A
  • S:G155A
  • S:T159G
  • S:T166C
  • S:G174A
  • S:G180A
  • S:C192A
  • S:A193G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3 & OL774851.1 references

    Substitutions

    NP

  • NP:G23A
  • NP:S39N
  • NP:S52G
  • NP:A100T
  • NP:N125S
  • NP:N150S
  • NP:A154S
  • NP:S165P
  • NP:Q179L
  • NP:G185S
  • NP:P189S
  • NP:V198I
  • NP:D199E
    • Deletions
    None
    Insertions
    None

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