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LOC_001GKM7.1
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Download FASTA
Download metadata TSV
Thailand/LOC_001GKM7.1/2024-01-28
J. Puenpa,
S. Dara &
Y. Poovorawan
Center of Excellence in Clinical Virology, Chulalongkorn University, Department of Pediatrics
Sample details
Collection date
2024-01-28
Earliest release date
2025-04-01
Sampling location
Thailand
Isolate name
RvA/CU48789/THA/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-27 16:02
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-04-01
NCBI update date
2025-04-01
INSDC accession
PV260037.1
Host
Host
Homo sapiens
Submission details
Submission ID
PV260037.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-27 16:01:59 UTC
Date released
2026-02-27 16:16:03 UTC
Clade
Clade EV-D68
B3
Genotype
Genotype
EV-D68
Alignment and QC
Total SNPs
181
Total deleted nucs
113
Total ambiguous nucs
1
Length
564 (9.18%)
Variant
True
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
T
469
C
C
471
T
C
475
A
A
477
C
T
478
C
G
480
T
A
484
T
T
490
A
A
496
G
A
503
T
T
506
A
A
507
G
T
510
A
C
520
A
G
525
T
C
527
A
T
530
G
G
532
A
Show more
Deletions
600-625, 638-724
Insertions
N/A
Amino acid mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
VP2
VP2:
S
3
T
VP2:
A
4
V
VP2:
V
13
I
VP2:
L
14
I
VP2:
L
16
I
VP2:
K
17
T
VP2:
L
18
R
VP2:
N
20
D
VP2:
A
22
T
VP2:
V
24
T
VP2:
T
25
S
VP2:
E
27
D
VP2:
A
28
V
VP2:
Y
31
A
VP2:
C
32
V
VP2:
C
33
V
VP2:
A
34
G
VP2:
E
37
V
Show more
VP4
VP4:
T
6
S
VP4:
Q
9
N
VP4:
T
10
V
VP4:
E
14
S
VP4:
N
15
T
VP4:
A
16
Q
VP4:
I
18
S
VP4:
A
19
V
VP4:
T
20
S
VP4:
H
24
S
VP4:
I
25
L
VP4:
T
26
N
VP4:
N
28
F
VP4:
Q
29
N
VP4:
F
32
Y
VP4:
Y
33
F
VP4:
S
36
A
VP4:
Y
37
A
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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