This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001GDCY.1

France/LOC_001GDCY.1/2023-07-26
M. Bisseux, A. Mirand, C. Henquell, J.-L. Bailly, M. Jeannoel, I. Schuffenecker, Q. Semanas, A. Oblette, E. Calapietra & L. Josset

Centre National de Reference Enterovirus et Parechovirus - CHU Lyon, Hospices Civils de Lyon

Sample details

Collection date
2023-07-26
Earliest release date
2025-07-12
Sampling location
France
Isolate name
S2_230051598501_C1_VER_FRA_26_07_2023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-16 08:47insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-07-12
NCBI update date
2025-07-12
INSDC accession

Host

Host

Submission details

Submission ID
PQ365582.1
Submitting group
Date submitted
2026-04-16 08:47:38 UTC
Date released
2026-04-16 09:12:27 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
152
Length
860 (11.6%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T2141C
  • A2148C
  • C2153G
  • A2156C
  • T2159C
  • G2168C
  • C2177T
  • C2180A
  • C2192G
  • T2193C
  • C2204T
  • C2207T
  • C2213T
  • C2216A
  • C2228T
  • T2231C
  • C2234T
  • T2237C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L

VP3

  • VP3:T232S
  • VP3:E237Q
  • VP3:A239G
Deletions
N/A
Insertions
N/A

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